View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_2 (Length: 758)
Name: NF4306_low_2
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 18 - 745
Target Start/End: Complemental strand, 27297067 - 27296340
Alignment:
| Q |
18 |
ggatttactattcagggaaatggcattattgatggaagaggttcagtatggtggcaagacactaagtataatgatcctttagatgatgaggaaaaactct |
117 |
Q |
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| T |
27297067 |
ggatttactattcaaggaaatggcatttttgatggaagaggttcagtatggtggcaagacactcagtataatgatcctttagatgatgaggaaaaactct |
27296968 |
T |
|
| Q |
118 |
tggtacctttaaacaacacaattgtgagcccaccaatgcaggtaatttccatttttaccatgcaatttcgcggatttatctcctcgaaagtgatcaattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296967 |
tggtacctttaaacaacacaattgtgagcccaccaatgcaggtaattttcatttttaccatgcaatttcgcggatttatctcctcgaaagtgatcaattc |
27296868 |
T |
|
| Q |
218 |
attttagagtataaaacaagtaatatcaacaattatcagtagtcgatatttcatacacactatgaaacgcagacacaaacacaaatgtgacgttgatagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296867 |
attttagagtataaaacaagtaatatcaacaattatcagtagtcgatatttcatacacactatgaaacgcagacacaaacacaaatgtgacgttgatagc |
27296768 |
T |
|
| Q |
318 |
aacacatagacactagtaatagtttaagacaatagaagggatgaaatgtaaccacatgtgtccgtgtcatgtcaatattagacactgacacatgtcgggc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27296767 |
aacacatagacactagtaatagtttaagacaatagaagggatgaaatgtaaccacatgtgtccgtgtcatgtcaatattagacagtgacacatgtcgggc |
27296668 |
T |
|
| Q |
418 |
accatacacgcctatttttccgtagaaattttgttgttcacattaagctaatcattta-acctttgcgattgtactagattgaaagttcactgggaggaa |
516 |
Q |
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| T |
27296667 |
accatacacgcctatttttccatagaaattttgttgttcacattaagctaatcatttatacctttgcgattgtactagattgaaagttcactgggaggaa |
27296568 |
T |
|
| Q |
517 |
aaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaatttgatttatgttaaggagatttaggaacataatgaagctaat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296567 |
aaatgccaagcatcaaaccaactgtgagtaacattttaaacctttttcaacaccaaatttgatttatgttaaggagatttaggaacataatgaagctaat |
27296468 |
T |
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| Q |
617 |
acatgtttctgtaacaggcaataaggttctatggaagtattaatccaacagtcacaggcataacaattcaaaatagtccacaatgccatctcaagtttga |
716 |
Q |
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| T |
27296467 |
acatgtttctgt-acaggctataaggttctatggaagtattaatccaacagtcacaggcataacaattcaaaatagtccacaatgccatctcaagtttga |
27296369 |
T |
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| Q |
717 |
caactgtaatggagtcttggtccatgatg |
745 |
Q |
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| T |
27296368 |
caactgtaatggagtcttggtccatgatg |
27296340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 24047906 - 24047956
Alignment:
| Q |
362 |
aatgtaaccacatgtgtccgtgtcatgtcaatattagacactgacacatgt |
412 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||| |||||| |
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| T |
24047906 |
aatgtaactacatgtgtcgttgtcatgtcaatattagacactgaaacatgt |
24047956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 745
Target Start/End: Original strand, 14737638 - 14737723
Alignment:
| Q |
660 |
tccaacagtcacaggcataacaattcaaaatagtccacaatgccatctcaagtttgacaactgtaatggagtcttggtccatgatg |
745 |
Q |
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|||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | || ||||||| |
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| T |
14737638 |
tccaactgtcacgggtataacaattcagaatagtcctcagtgtcatctaaagtttgacaattgcaatggggtccttgttcatgatg |
14737723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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