View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_20 (Length: 340)
Name: NF4306_low_20
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 47034770 - 47034588
Alignment:
| Q |
21 |
ctatcccgtgtaattgaatctatgctagagttggaagtttatgactcacctcagtcagaattgttgcatgtgaactttattctaacttttttaattaatt |
120 |
Q |
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| T |
47034770 |
ctattccgtgtaattgaatctatgctagagttggaagtttatgactcacctcagtcagaattgttgcatgtgaactttattctaacttttttaattaatt |
47034671 |
T |
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| Q |
121 |
aaggatgattaatgtgtatggttaacttctaagattcgtgtgtaaagtggttcatttagaagacaacttataaatttcaactt |
203 |
Q |
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| T |
47034670 |
aaggatgattaatgtgtatggttaacttctaagattcgtgtgtaaagtggttcagttagaagacaatttagaaatttcaactt |
47034588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 199 - 327
Target Start/End: Complemental strand, 47016350 - 47016222
Alignment:
| Q |
199 |
aacttctgccttgtttcaattacatgtgagagtgaaaattcccactttaataacgataccaatgggtgtggaaacctagaggagtgacaacattttaccg |
298 |
Q |
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| T |
47016350 |
aacttctaccttgtttcaattacatgtgagagtgaaaatttccactttaataacgataccaatgggtgttgaaacctagaggagtgacaacattttaccg |
47016251 |
T |
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| Q |
299 |
aatcacacatatgacctttagggtgatga |
327 |
Q |
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| T |
47016250 |
aatcacacatatgatctttagggtgatga |
47016222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 25796007 - 25795833
Alignment:
| Q |
77 |
agaattgttgcatgtgaactttattctaacttttttaattaattaaggatgattaatgtgtatggttaacttctaagattcgtgtgtaaagtggttcatt |
176 |
Q |
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| T |
25796007 |
agaatcgttacatatgaattttattctaatgtctttaatttattagggatcattatggtatgtggttaggttctaagattcttgtgcattgtggttcttt |
25795908 |
T |
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| Q |
177 |
tagaagacaacttataaatttcaacttctgccttgtttcaattacatgtgagagtgaaaattcccactttaataa |
251 |
Q |
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| T |
25795907 |
tagatgacaatttaagaatttcaacatttacctcgtttcaattacatgtgagagtgtaagtccccactttaataa |
25795833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 15073242 - 15073395
Alignment:
| Q |
79 |
aattgttgcatgtgaactttattctaacttttttaattaattaagg-atgattaatgtgtatggttaacttctaagattcgtgtgtaaagtggttcattt |
177 |
Q |
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||||||| ||| |||| |||||||||| | ||||||| ||||||| || |||| | ||||||||| |||||||||| ||||| |||||| ||| |
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| T |
15073242 |
aattgttacatatgaattttattctaatgtctttaatttattaagggatcattaggatatatggttaagttctaagatttgtgtgcggtgtggtttcttt |
15073341 |
T |
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| Q |
178 |
agaagacaacttataaatttcaacttctgccttgtttcaattacatgtgagagtg |
232 |
Q |
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| T |
15073342 |
agatgacaatttaggaatttgaactt-tgtctcgtttcaattacatgtgagagtg |
15073395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 16810848 - 16810734
Alignment:
| Q |
213 |
ttcaattacatgtgagagtgaaaattcccactttaataacgataccaatgggtgtggaaacctagaggagtgacaacatttta-ccgaatcacacatatg |
311 |
Q |
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||||||||||||||||||| || | ||| |||||||||| ||||||| | |||| | ||||||||||||| || || ||||| ||| || |||||||| |
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| T |
16810848 |
ttcaattacatgtgagagtttaagtccccgctttaataacaataccaaagtgtgttggaacctagaggagtcacgaccttttacccgtattgcacatatg |
16810749 |
T |
|
| Q |
312 |
acctttagggtgatg |
326 |
Q |
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| T |
16810748 |
accttaagggtgatg |
16810734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 17043669 - 17043605
Alignment:
| Q |
167 |
gtggttcatttagaagacaacttataaatttcaacttctgccttgtttcaattacatgtgagagt |
231 |
Q |
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|||||||||||||| ||||| |||||||||| ||| | || |||||||||||||| ||| ||||| |
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| T |
17043669 |
gtggttcatttagatgacaatttataaattttaacatttgtcttgtttcaattacctgtaagagt |
17043605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 18669235 - 18669051
Alignment:
| Q |
79 |
aattgttgcatgtgaactttattctaacttttttaattaattaagg-atgattaatgtgtatggttaacttctaagattcgtgtgtaaagtggttcattt |
177 |
Q |
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||||||| ||| |||| |||||||||| | ||||||| ||||||| || |||| | ||||||||| |||||||||| ||||| ||||||| ||| |
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| T |
18669235 |
aattgttacatatgaattttattctaatgtctttaatttattaagggatcattaggatatatggttaagttctaagatttgtgtgcggtgtggttctttt |
18669136 |
T |
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| Q |
178 |
agaagacaacttataaatttcaacttctgccttgtttcaattacatgtgagagtgaaaattcccactttaataacgataccaatg |
262 |
Q |
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||| ||||| ||| ||||| || | || || ||||||||||||| | |||||| || | | || ||||||||| ||||||||| |
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| T |
18669135 |
agatgacaatttaggaatttgaatctttgtctcgtttcaattacatctaagagtgtaagtcctcattttaataacaataccaatg |
18669051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 28518629 - 28518525
Alignment:
| Q |
223 |
tgtgagagtgaaaattcccactttaataacgataccaatgggtgtggaaacctagaggagtgacaacattttaccgaatcacacatatgacctttagggt |
322 |
Q |
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| T |
28518629 |
tgtgagagtgcaagtccccactttattaagtataccaatgtatacggaatcttagaggattgataaccatttaccgtattgcacatatgacctttagggt |
28518530 |
T |
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| Q |
323 |
gatga |
327 |
Q |
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||||| |
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| T |
28518529 |
gatga |
28518525 |
T |
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