View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_23 (Length: 332)
Name: NF4306_low_23
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 27293224 - 27293539
Alignment:
| Q |
1 |
ccttaaccgtatgaggtcgaaaagcattcctcctctccggcctattaatgctaatctgcaaaattcccaacatttacaaaattgaataaaacaagaaaag |
100 |
Q |
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| T |
27293224 |
ccttaaccgtatgaggtcgaaaagcattcctcctctccggcctattaatgctaatctgcaaaattcccaacatttacaaaattgaataaaacaagaaaag |
27293323 |
T |
|
| Q |
101 |
aaaatgagaaaggtggaaggacaaccttggcaattccttcaccaatggatttctcatagataatgtcagtgaaaacctttccttcatcatcatcagaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27293324 |
aaaatgagaaaggtggaaggacaaccttggcaattccttcaccaacggatttctcatagagaatgtcagtgaaaacctttccttcatcatcatcagaagg |
27293423 |
T |
|
| Q |
201 |
aacagccttccaaactacgtcgtcagaaggaacatcaccatgaacacgttggtaagttgaagtgtgacacaaggaaataagttgaggtggtgatgaggaa |
300 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27293424 |
aacaaccttccaaactacgtcgtgagaaggaacatcaccatgaacacgttggtaagttgaagtgtgacacaaggaaataagttgaggtggtgatgaggaa |
27293523 |
T |
|
| Q |
301 |
acaaggtggttggtta |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
27293524 |
acaaggtggttggtta |
27293539 |
T |
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