View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_25 (Length: 323)
Name: NF4306_low_25
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 10990244 - 10990536
Alignment:
| Q |
18 |
gtctttacaaacatatccacaacctcaatctttcagaatctcatttcaactacgtgaaatatgactatgaagattttgtcgaccatcactttttcaattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10990244 |
gtctttacaaacatatccacaacctcaatctttcagaatctcatttcaactacgtgaaatatgactatgaagattttgtcgaccatcactttttcaattg |
10990343 |
T |
|
| Q |
118 |
ttcgcttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcctctcttctgaatcaatcgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10990344 |
ttcgcttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcctctcttctgaatcaatcgac |
10990443 |
T |
|
| Q |
218 |
tacctccctctttctttttgcaccaaaatgtttaatgtttcattaatcagcatttctcgttctgttccaaaccaaaagtttcttcgtttgatg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10990444 |
tacctccctctttctttttgcaccaaaatgtttaatgtttcattaatcagcatttctcgttctgttccaaaccaaaagtttcttcgtttgatg |
10990536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 11039759 - 11040002
Alignment:
| Q |
18 |
gtctttacaaacatatccacaacctcaatctttcagaatctcatttcaactacgtgaaatatgactatgaagattttgtcgaccatcactttttcaattg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
11039759 |
gtctttacaaacatatccacaacctcaatctttcagaatctcatttcaactacttgaaacatgactacgatgattttgtcgaccatcactttttcaattg |
11039858 |
T |
|
| Q |
118 |
ttcgcttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcctctcttctgaatcaatcgac |
217 |
Q |
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| T |
11039859 |
ttcgcttttgaatagagattggatggattcctattcggtttcgtgtctaagaacttccacctctcaaatatatgctatcccttctagtacaaatattgaa |
11039958 |
T |
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| Q |
218 |
tacctccctctttctttttgcaccaaaatgtttaatgtttcatt |
261 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
11039959 |
gaccttcctctttcgttttgcaccaaaatgtttaatgtttcatt |
11040002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 11024694 - 11024859
Alignment:
| Q |
18 |
gtctttacaaacatatccacaacctcaatctttcagaatctcatttcaactacgtgaaatatgactatgaagattttgtcgaccatcactttttcaattg |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||| ||||||| |
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| T |
11024694 |
gtctttacaaacatatccacaaccttaatctttcagaatctcatttcaactacttgaaacatgactatgatgattttgtcgactatcactttatcaattg |
11024793 |
T |
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| Q |
118 |
ttcgcttttgaatagagatgacataaattcttatttggttccgtgtttaagtacatcaacctctca |
183 |
Q |
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||| ||||||| |||||| |||||| |||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
11024794 |
ttcacttttgattagagacgacatagattcttatttggttccatgtctaagtacctcaacctctca |
11024859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 11000946 - 11000868
Alignment:
| Q |
18 |
gtctttacaaacatatccacaacctcaatctttcagaatctcatttcaactacgtgaaatatgactatgaagattttgt |
96 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||| |
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| T |
11000946 |
gtctttgcaaacatatcaacaacctcaatctttcagaatctcatttcaactacttgaaacatgactatgatgaatttgt |
11000868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 10929228 - 10929393
Alignment:
| Q |
102 |
atcactttttcaattgttcgcttttgaatagagatgac---ataaattcttatttggttccgtgtttaagtacatcaacctctcaaatatacgttatcct |
198 |
Q |
| |
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|||||||||| |||||||| ||||||| ||||||||| || |||| ||||||||||||||| |||| || ||||||||||||| ||||| ||||| |
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| T |
10929228 |
atcacttttttaattgttcacttttgattagagatgatgatatggattcctatttggttccgtgtctaagcacttcaacctctcaaacatacgctatccc |
10929327 |
T |
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| Q |
199 |
ctcttctgaatcaatcgactacctccctctttctttttgcaccaaaatgtttaatgtttcattaat |
264 |
Q |
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||| |||| | ||| | | | | ||||| | |||||||||||||||| |||||||||| |||| |
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| T |
10929328 |
tgcttatgaacctatcaaattctttcctctcacgttttgcaccaaaatgtataatgtttcagtaat |
10929393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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