View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_28 (Length: 306)
Name: NF4306_low_28
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_28 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 21006937 - 21006649
Alignment:
| Q |
18 |
aacattagctatggaggaggttaatctgattcaacatcttttgaatacgctgttttttcggatgagctttatacacaagacttacgcttaacttgtcctt |
117 |
Q |
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| T |
21006937 |
aacattagctatggaggaggttaatctgattcaacatcttttgaatacgctgttttttcggatgagctttatactcaagacttacgcttaacttgtcctt |
21006838 |
T |
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| Q |
118 |
accaacaatttgaacaatcaggataagttatggagggagaaagcaagggaccagaattttattcattgggactgtaacacggcttattttcatagagttg |
217 |
Q |
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| T |
21006837 |
accaacaatttgaacaatcaggataagttatggagggagaaagcaagggaccagaattttattcattgggactgtaacacggcttattttcatagagttg |
21006738 |
T |
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| Q |
218 |
cgaaaacccacgcactctctaaaattatgtcggttttacatgatggggacaccgttattacatatgcttcagctattgagatgcatgtt |
306 |
Q |
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| T |
21006737 |
cgaaaacccacgcactctctaaaattatgtcggttttacatgatggggacaccgttattacatatgcttcagctattgagatgcatgtt |
21006649 |
T |
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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 124884 - 124968
Alignment:
| Q |
134 |
atcaggataagttatggagggagaaagcaagggaccagaattttattcattgggactgtaacacggcttattttcatagagttgc |
218 |
Q |
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| T |
124884 |
atcaggatattttatggaaggagaaagcaagggatcagaattttattaatggggattgcaacacttcctattttcacagacttgc |
124968 |
T |
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