View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_29 (Length: 284)
Name: NF4306_low_29
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 42812845 - 42813109
Alignment:
| Q |
12 |
atgaacaatattcaaagcaaggaaaagaaatagttaccaagaaggctcgaaaaagagcctgaatgcggatagcagcccattcctgtctgataaggatgaa |
111 |
Q |
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| T |
42812845 |
atgaacaatattcacagcaag-aaaagaaatagttaccaagaaggctcgaaaaagagcctgaatgcggatagcagcccattcctgcctgataaggatgaa |
42812943 |
T |
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| Q |
112 |
atctttaggtgtagctcgaacaacgacagcaaccgcagcagcagtatctgtaatggaagaatcagacacagtgttgttcatggtt---------gaagaa |
202 |
Q |
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| T |
42812944 |
atctttaggtgcagctcgaacaacgacagcaactgcagcagcagtatctgtaatggaagaatcagacacagtcttgttgatggttgaagaagaagaagaa |
42813043 |
T |
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| Q |
203 |
gaagaagaagttttccatatcttccatttcttcttagtattactacactttttctcctgaagaaac |
268 |
Q |
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| T |
42813044 |
gaagaagaagttttccatatcttccatttcttcttagtactactacactttttctcctgaataaac |
42813109 |
T |
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