View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_3 (Length: 705)
Name: NF4306_low_3
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Original strand, 37201305 - 37201982
Alignment:
| Q |
18 |
attagcacacattgttgcttattttgattttagattttgtcaataagtatatctaggactgaatgtgttatattccatagatgaagttgagagaaagtta |
117 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201305 |
attagtacacattgttgcttattctgattttagattttgtcaataagtatatctaggactgaatgtgttatattccatagatgaagttgagagaaagtta |
37201404 |
T |
|
| Q |
118 |
gaaaacttttgttttgatggtaatgaatgagtaatattgcaaatgagaaaattgacctttttatgaggtgattacatctatatataggcaccaccactaa |
217 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201405 |
gaaaacttttgtattgatggtaatg----agtaatattgcaaatgagaaaattgacctttttatgaggtgattacatctatatataggcaccaccactaa |
37201500 |
T |
|
| Q |
218 |
gtaccaaaaactactatctttaatagtagcaaagcggacggagtgagtaaagcaagagcccctgccctttgggcttggtccatttgttagttgtgataca |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37201501 |
gtaccaaaaactactatctctaatagtagcaaagcggacggagtgagtaaagcaagagcccctgccctttgggcttggtccatttgttagttgtgataca |
37201600 |
T |
|
| Q |
318 |
actaggagggggtagagggtgcggggggcgacagattaaggtaaacctgtaatcttgactacaataattaaacaaagttttgtactatgtaatcgtaacc |
417 |
Q |
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| T |
37201601 |
actaggaggggatagagggtgcggggggcgacagattaaggtagacctgtaatcttgactacaataattaaacaaagttttgtactatgtaatcgtaacc |
37201700 |
T |
|
| Q |
418 |
attgcataatagaaaactacagtagacaacagtcactctgcgactgcagtccaaggtgtagaacatgctaggatagttagagttttgttattgttagtca |
517 |
Q |
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| T |
37201701 |
attgcataatagaaaactacaatagacaacagtcactctgcgactgcagtccaaggtgtagcacatgctaggatagttagagttttgttattgttagtca |
37201800 |
T |
|
| Q |
518 |
atttggaattagttaggagttagttactcaattagttgtgcagctgggttctattaataacactaacactattgtgtacataattcaatatcttttatca |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
37201801 |
atttggaattagttaggagttagttactcaattagttgtgcagctgggttctattaataacactaacattattgtgtacaaaattcaatatcttttatca |
37201900 |
T |
|
| Q |
618 |
atctataatatatgattccttaatgagcttttatctcaatgtgtattcctatgctctctttctctcctatgagtataatcta |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
37201901 |
atctataatatatgattccttaatgagcttttatctcaatgtgtattcctatgctctctttctctcctgtgagtatgatcta |
37201982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 545
Target Start/End: Original strand, 5209109 - 5209145
Alignment:
| Q |
509 |
tgttagtcaatttggaattagttaggagttagttact |
545 |
Q |
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| T |
5209109 |
tgttagtcaatttggaattagttaggagttaattact |
5209145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 48090478 - 48090533
Alignment:
| Q |
180 |
atgaggtgattacatctatatataggcaccaccactaagtaccaaaaactactatcttt |
238 |
Q |
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| T |
48090478 |
atgaggtgattacatctatatatagg---caccactaagtaccagttactactatcttt |
48090533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 2743485 - 2743531
Alignment:
| Q |
278 |
cctgccctttgggcttggtccatttgttagttgtgatacaactagga |
324 |
Q |
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| T |
2743485 |
cctgccctttgggcttggcccatttgtttgttgggttacaactagga |
2743531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 15846753 - 15846712
Alignment:
| Q |
397 |
ttgtactatgtaatcgtaaccattgcataatagaaaactaca |
438 |
Q |
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||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
15846753 |
ttgtactatgtaatcttaagcattgcataatagaaaattaca |
15846712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 555
Target Start/End: Complemental strand, 41934087 - 41934059
Alignment:
| Q |
527 |
tagttaggagttagttactcaattagttg |
555 |
Q |
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| T |
41934087 |
tagttaggagttagttactcaattagttg |
41934059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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