View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_31 (Length: 281)
Name: NF4306_low_31
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_31 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 21505945 - 21505694
Alignment:
| Q |
19 |
actgttgtgcttgattaaagatgctggtaaaccgtaaaaatcaattaacttgtggaattttggagtttttnnnnnnnntatcctggattgttattccatt |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |
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| T |
21505945 |
actgttgtgcttgattaaagatgctggtaaatcgtaaaaatcaattaacttgtggaattttggagatttttaaaaaaatatcctgtattgttattccatt |
21505846 |
T |
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| Q |
119 |
ctactttttgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctactcaaatggaacatattcattttatctatgcatatttgtttg |
218 |
Q |
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|||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21505845 |
ctacttttcgatacccatggaaaattaaaattgtgaaaacagttatttgacatccctactcaaatggaacatattcattttatctatgcatatttgtttg |
21505746 |
T |
|
| Q |
219 |
gatcttgttgtgaatgtattccaggaggatcacatagctatcctatattcat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21505745 |
gatcttgttgtgaatgtattccaggaggatcacatagctatcctatattcat |
21505694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 1020 - 1247
Alignment:
| Q |
19 |
actgttgtgc-ttgattaaagatgctggtaaaccgtaaaaatcaattaacttgtggaattttg-gagtttttnnnnnnnntatcctggattgttattcca |
116 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| |
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| T |
1020 |
actgttgtgccttgattaaagatgctggtaaactataaaaatcaattaacttgtggaattttttgagattttaaaaaa--tatcctagattgttattcca |
1117 |
T |
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| Q |
117 |
ttctactttttgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctactcaaatggaacatattcattttatctatgcatatttgtt |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| |
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| T |
1118 |
ttctacttttcgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctaccccaatggaacataatcattttatctatccatatttgtt |
1217 |
T |
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| Q |
217 |
tggatcttgttgtgaatgtattccaggagg |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1218 |
tggatcttgttgtgaatgtattccaggagg |
1247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 21530064 - 21530292
Alignment:
| Q |
19 |
actgttgtgc-ttgattaaagatgctggtaaaccgtaaaaatcaattaacttgtggaattttg-gagtttttnnnnnnnntatcctggattgttattcca |
116 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| |
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| T |
21530064 |
actgttgtgccttgattaaagatgctggtaaactataaaaatcaattaacttgtggaattttttgagattttaaaaaaa-tatcctagattgttattcca |
21530162 |
T |
|
| Q |
117 |
ttctactttttgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctactcaaatggaacatattcattttatctatgcatatttgtt |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| |
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| T |
21530163 |
ttctacttttcgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctaccccaatggaacataatcattttatctatccatatttgtt |
21530262 |
T |
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| Q |
217 |
tggatcttgttgtgaatgtattccaggagg |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21530263 |
tggatcttgttgtgaatgtattccaggagg |
21530292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 22907844 - 22907784
Alignment:
| Q |
186 |
aacatattcattttatctatgcatatttgtttggatcttgttgtgaatgtattccaggagg |
246 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22907844 |
aacataatcattttatctatgcatatttgtttggatcttgttgtaaatgtattccaggagg |
22907784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 22907919 - 22907859
Alignment:
| Q |
28 |
cttgattaaagatgctggtaaaccgtaaaaatcaattaacttgtggaattttggagttttt |
88 |
Q |
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| T |
22907919 |
cttgattaaagatgctggtaaaccgtaaaaatgaattaacttgtggaattttagagatttt |
22907859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 20857146 - 20857047
Alignment:
| Q |
100 |
cctggattgttattccattctactttttgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctactcaaatggaacatattcatttt |
199 |
Q |
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|||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||| ||| | || |||||||||| ||||||| |
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| T |
20857146 |
cctggattgtaatttcattctacttttcgatacccatgcaaaatcaaaactgtgaaaacaattatttggcattccttcccagatggaacataatcatttt |
20857047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 11676249 - 11676211
Alignment:
| Q |
50 |
ccgtaaaaatcaattaacttgtggaattttggagttttt |
88 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
11676249 |
ccgtaaaaatcaattaacttgtggaattttggagatttt |
11676211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 44100099 - 44099985
Alignment:
| Q |
100 |
cctggattgttattccattctactttttgatacccatgcaaaatcaaaattgtgaaaacagttatttgacatccctactcaaatggaacatattcatttt |
199 |
Q |
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||||||||| || || |||||| ||||| | |||| ||||||||||||||||||| || |||||| ||| ||||| ||||| | || | |||| || |
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| T |
44100099 |
cctggattgaaatgccgttctacattttgtttcccacacaaaatcaaaattgtgaaagcaattatttagcattcctacccaaatagcacttcatcatatt |
44100000 |
T |
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| Q |
200 |
atctatgcatatttg |
214 |
Q |
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||||||||||||||| |
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| T |
44099999 |
atctatgcatatttg |
44099985 |
T |
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