View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_low_34 (Length: 275)

Name: NF4306_low_34
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_low_34
NF4306_low_34
[»] chr3 (8 HSPs)
chr3 (15-267)||(26439194-26439446)
chr3 (167-208)||(47783108-47783149)
chr3 (168-208)||(32221509-32221549)
chr3 (168-204)||(46733048-46733084)
chr3 (171-208)||(11256559-11256596)
chr3 (168-208)||(31280186-31280226)
chr3 (168-248)||(40905833-40905913)
chr3 (168-208)||(40955809-40955849)
[»] chr5 (7 HSPs)
chr5 (168-208)||(17858199-17858239)
chr5 (171-207)||(9530947-9530983)
chr5 (169-208)||(20185352-20185391)
chr5 (168-208)||(968321-968361)
chr5 (168-208)||(2424477-2424517)
chr5 (168-208)||(38958092-38958132)
chr5 (168-208)||(39030594-39030634)
[»] chr4 (6 HSPs)
chr4 (168-249)||(8257979-8258059)
chr4 (168-249)||(8271397-8271477)
chr4 (172-205)||(5496893-5496926)
chr4 (168-208)||(4423180-4423220)
chr4 (168-208)||(7270229-7270268)
chr4 (168-208)||(54235261-54235301)
[»] chr2 (13 HSPs)
chr2 (168-205)||(2884287-2884324)
chr2 (168-208)||(31469102-31469142)
chr2 (168-208)||(35693949-35693989)
chr2 (143-208)||(38935402-38935469)
chr2 (168-208)||(43398877-43398917)
chr2 (168-207)||(17437166-17437205)
chr2 (168-201)||(10459297-10459330)
chr2 (168-208)||(944802-944842)
chr2 (168-208)||(4592470-4592510)
chr2 (168-208)||(5388848-5388888)
chr2 (168-208)||(11386340-11386380)
chr2 (168-208)||(19924335-19924375)
chr2 (172-208)||(33615286-33615322)
[»] chr8 (4 HSPs)
chr8 (168-208)||(13209995-13210035)
chr8 (168-208)||(33557814-33557854)
chr8 (145-208)||(29110998-29111063)
chr8 (168-208)||(11196256-11196296)
[»] chr7 (2 HSPs)
chr7 (168-208)||(44816498-44816538)
chr7 (168-207)||(32652446-32652485)
[»] chr6 (5 HSPs)
chr6 (168-208)||(8437813-8437853)
chr6 (168-208)||(2282429-2282469)
chr6 (168-208)||(9829922-9829962)
chr6 (168-208)||(28004662-28004702)
chr6 (168-208)||(33822319-33822359)
[»] chr1 (5 HSPs)
chr1 (168-208)||(3694026-3694066)
chr1 (168-208)||(5056333-5056373)
chr1 (168-208)||(30693366-30693406)
chr1 (168-208)||(47543630-47543670)
chr1 (168-208)||(3739853-3739893)
[»] scaffold0067 (1 HSPs)
scaffold0067 (173-208)||(35976-36011)
[»] scaffold0009 (1 HSPs)
scaffold0009 (167-208)||(51260-51301)
[»] scaffold0233 (1 HSPs)
scaffold0233 (145-204)||(18291-18351)
[»] scaffold0034 (1 HSPs)
scaffold0034 (168-208)||(94977-95017)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 26439194 - 26439446
Alignment:
Q  15 aaaattagtggtaagagattgaatacaaaattatatttgtctttcattaaaccatgagatatatacaagctatccaaaataacaaaatacattttatttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26439194 aaaattagtggtaagagattgaatacaaaattatatttgtctttcattaaaccatgagatatatacaagctatccaaaataacaaaatactttttatttt 26439293  T
Q  115 atactaagaaaatatttttcccccttttcaaaaatataaacaaatattaacc-aaaaaattaatgtatttggttcaaaatttgtatcaaatacatgttga 213  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  26439294 atactaagaaaatattttttccccttttc-aaaatataagcaaatattagccaaaaaaattaatgtatttgattcaaaatttgtatcaaatacatgttga 26439392  T
Q  214 cccatttttctttacattttgggacgaagggagtatatatgtataattcatctc 267  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26439393 cccatttttctttatattttgggacgaagggagtatatatgtataattcatctc 26439446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 47783108 - 47783149
Alignment:
Q  167 aaaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  47783108 aaaaagttaatgtatttggttcaaaatttgtatcagatacat 47783149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 32221549 - 32221509
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  32221549 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 32221509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 46733048 - 46733084
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaat 204  Q
    ||||||||||||||||| |||||||||||||||||||    
T  46733048 aaaaattaatgtatttgattcaaaatttgtatcaaat 46733084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 11256559 - 11256596
Alignment:
Q  171 aattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||| | |||||||||||||||||||||    
T  11256559 aattaatgtatttgatccaaaatttgtatcaaatacat 11256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 31280186 - 31280226
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| |||||||||||||||||||||||||| || ||||||    
T  31280186 aaaatttaatgtatttggttcaaaatttgtaccatatacat 31280226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 40905833 - 40905913
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagta 248  Q
    |||| ||||| ||||||||||||||||| || || ||||||||| ||  ||||||  |||||||||| |||  ||||||||    
T  40905833 aaaagttaatttatttggttcaaaatttataccagatacatgttaacttatttttgcttacattttgagacagagggagta 40905913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 40955809 - 40955849
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  40955809 aaaaattattgtatttagttcaaaatttgtatcatatacat 40955849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 17858199 - 17858239
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  17858199 aaaaattaatgtatttggttcaaaatttgtatcagatacat 17858239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 9530947 - 9530983
Alignment:
Q  171 aattaatgtatttggttcaaaatttgtatcaaataca 207  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9530947 aattaatgtatttggttcaaaatttatatcaaataca 9530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 20185391 - 20185352
Alignment:
Q  169 aaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  20185391 aaaattaatgtatttggttcaaaatttgtacaaaatacat 20185352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 968361 - 968321
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  968361 aaaaattaatatatttagttcaaaatttgtaccaaatacat 968321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 2424517 - 2424477
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| |||||||||||||||||||||||||| || ||||||    
T  2424517 aaaagttaatgtatttggttcaaaatttgtaccatatacat 2424477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 38958092 - 38958132
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||||||||| |||||| |||||||||    
T  38958092 aaaagttaatgtatttggttcaaattttgtaccaaatacat 38958132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 39030594 - 39030634
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  39030594 aaaagttaatgtatttggttaaaaatttgtaccaaatacat 39030634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 8257979 - 8258059
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagtat 249  Q
    |||| ||||||||||||||||||||||| |||| | |  ||||||||  |||||| |||| ||||||||||| |||||||||    
T  8257979 aaaagttaatgtatttggttcaaaatttatatcgact-tatgttgacatatttttgtttatattttgggacggagggagtat 8258059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 8271397 - 8271477
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagtat 249  Q
    |||| ||||||||||||||||||||||| |||| | |  ||||||||  |||||| |||| ||||||||||| |||||||||    
T  8271397 aaaagttaatgtatttggttcaaaatttatatcgact-tatgttgacatatttttgtttatattttgggacggagggagtat 8271477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 5496926 - 5496893
Alignment:
Q  172 attaatgtatttggttcaaaatttgtatcaaata 205  Q
    ||||||||||||||||||||||||||| ||||||    
T  5496926 attaatgtatttggttcaaaatttgtaccaaata 5496893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 4423180 - 4423220
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||| |||||| ||||||||||||| |||||||||    
T  4423180 aaaaattaatatatttgattcaaaatttgtaccaaatacat 4423220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 7270229 - 7270268
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  7270229 aaaaattagtgtatttggttcaaaatttg-atcaaatacat 7270268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 54235301 - 54235261
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||||||||||||||||  ||||||||    
T  54235301 aaaagttaatgtatttggttcaaaatttgtactaaatacat 54235261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 2884287 - 2884324
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaata 205  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2884287 aaaaattaatgtatttggttcaaaatttatatcaaata 2884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 31469102 - 31469142
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  31469102 aaaagttaatgtatttggttaaaaatttgtatcaaatacat 31469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 35693949 - 35693989
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  35693949 aaaaattaatgtatttggtttaaaattagtatcaaatacat 35693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 38935469 - 38935402
Alignment:
Q  143 caaaaatataaacaaatattaaccaaaaaa--ttaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||||| ||||  ||| |||  ||||||||||| ||||||||| ||||||||||||||    
T  38935469 caaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacat 38935402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 43398917 - 43398877
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  43398917 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 43398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 17437205 - 17437166
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaataca 207  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  17437205 aaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 10459297 - 10459330
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatca 201  Q
    |||| |||||||||||||||||||||||||||||    
T  10459297 aaaagttaatgtatttggttcaaaatttgtatca 10459330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 944802 - 944842
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||| |||||||||||||| |||||||||    
T  944802 aaaagttaatgtatttagttcaaaatttgtaccaaatacat 944842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 4592470 - 4592510
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  4592470 aaaaattaatgtatttgattttaaatttgtatcaaatacat 4592510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 5388848 - 5388888
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  5388848 aaaaattaatgtatttgattcaaaatttggatcaagtacat 5388888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 11386340 - 11386380
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  11386340 aaaaattaatatatttaattcaaaatttgtatcaaatacat 11386380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 19924335 - 19924375
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||| |||||||||||||||| |||||||||    
T  19924335 aaaagttaatgtatatggttcaaaatttgtaccaaatacat 19924375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 33615286 - 33615322
Alignment:
Q  172 attaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||| |||||| |||||||||||||||||||||||    
T  33615286 attaatatatttgattcaaaatttgtatcaaatacat 33615322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 13209995 - 13210035
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  13209995 aaaagttaatgtatttggttcaaaatttgtatcagatacat 13210035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 33557854 - 33557814
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  33557854 aaaagttaatgtatttagttcaaaatttgtatcaaatacat 33557814  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 29111063 - 29110998
Alignment:
Q  145 aaaatataaacaaatattaaccaa--aaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||| ||| | |||  ||| ||||||||||||||||||||||| || |||||||||    
T  29111063 aaaatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacat 29110998  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 11196296 - 11196256
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||  |||||||||||||| ||||||||    
T  11196296 aaaaattaatgtatttaattcaaaatttgtattaaatacat 11196256  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 44816498 - 44816538
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  44816498 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 44816538  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 32652485 - 32652446
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaataca 207  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  32652485 aaaaattaatgtatttggttcaaagtttgtaccaaataca 32652446  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 8437853 - 8437813
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  8437853 aaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 2282429 - 2282469
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  2282429 aaaagttaatgtatttagttcaaaaattgtatcaaatacat 2282469  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 9829922 - 9829962
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  9829922 aaaaattaatgtattttgtttaaaatttgtaccaaatacat 9829962  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 28004702 - 28004662
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  28004702 aaaagttaatgtatttggctcaaaatttgtaccaaatacat 28004662  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 33822319 - 33822359
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  33822319 aaaagttaatatatttagttcaaaatttgtatcaaatacat 33822359  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 3694066 - 3694026
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  3694066 aaaaattaatgtatttgattcaaaatttgtattaaatacat 3694026  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 5056373 - 5056333
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  5056373 aaaaattaacgtatttgattcaaaatttgtatcaaatacat 5056333  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 30693366 - 30693406
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  30693366 aaaaattaatgtatttgattcaaaatttgtaccaaatacat 30693406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 47543630 - 47543670
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  47543630 aaaaattaatgaatttggttcaaaatttgtaccaaatacat 47543670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 3739893 - 3739853
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  3739893 aaaagttaatgtatttggttaaaaatttgtaccaaatacat 3739853  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 35976 - 36011
Alignment:
Q  173 ttaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||| |||||||||||||||||||||    
T  35976 ttaatgtatttggtacaaaatttgtatcaaatacat 36011  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 51301 - 51260
Alignment:
Q  167 aaaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    ||||||||||||||||| ||||||||||| || |||||||||    
T  51301 aaaaaattaatgtatttagttcaaaatttataccaaatacat 51260  T

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Target: scaffold0233 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 18351 - 18291
Alignment:
Q  145 aaaatataaacaaatattaaccaa-aaaattaatgtatttggttcaaaatttgtatcaaat 204  Q
    |||||||||||||| ||| | ||| ||||||||| ||||| ||| ||||||||||||||||    
T  18351 aaaatataaacaaaaattgatcaacaaaattaatatatttagttaaaaatttgtatcaaat 18291  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 94977 - 95017
Alignment:
Q  168 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 208  Q
    |||||||||||||||  |||||||||||||| |||||||||    
T  94977 aaaaattaatgtattatgttcaaaatttgtaccaaatacat 95017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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