View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_35 (Length: 272)
Name: NF4306_low_35
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 32932234 - 32931975
Alignment:
| Q |
1 |
ttggacattggcacgtgtccgggacaccaggccttcgatcagaaatgtcagtacagaacagataagtcttaattgaattaaatgtcattactgattccga |
100 |
Q |
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| T |
32932234 |
ttggacattgacacgtgtccgggacaccaggccttcgatcagaaatgtcagtacagaacagataagtcttaattgaattaaatgtcattactgattccga |
32932135 |
T |
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| Q |
101 |
tgttcaatgatgaagctatttaaagtatgcataactaaataccacaacttctgtgagtttgacgaaatcataatgacaccgtgaatttgttgaagcgcta |
200 |
Q |
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| T |
32932134 |
tattcaatgatgaagctatttaaagtatgcataactaaataccacaacttctgtgagtttgacgaaatcataatgacaccttgaatttgttgaagcgctg |
32932035 |
T |
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| Q |
201 |
aagtatagtttttgataaaatcacaacaatcgatggaaatataatctaagacatacacat |
260 |
Q |
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| T |
32932034 |
aagtatagtttttgataaaatcacaacaatcgatggaaatataatctaagacatacacat |
32931975 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 10734557 - 10734614
Alignment:
| Q |
157 |
gtttgacgaaatcataatgacaccgtgaatttgttgaagcgctaaagtatagtttttg |
214 |
Q |
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| T |
10734557 |
gtttgacaaaatcacaatgacaccgtgattttgttgaagctccaaagtgcagtttttg |
10734614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 44431608 - 44431656
Alignment:
| Q |
155 |
gagtttgacgaaatcataatgacaccgtgaatttgttgaagcgctaaag |
203 |
Q |
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| T |
44431608 |
gagtttgacgaaatcatgttgacaccatgattttgttgaagctctaaag |
44431656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 10106164 - 10106224
Alignment:
| Q |
154 |
tgagtttgacgaaatcataatgacaccgtgaatttgttgaagcgctaaagtatagtttttg |
214 |
Q |
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| T |
10106164 |
tgagtttgacgaaatcacaatgacactttaattttgttgaagctcaaaagcatagtttttg |
10106224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 6369420 - 6369360
Alignment:
| Q |
154 |
tgagtttgacgaaatcataatgacaccgtgaatttgttgaagcgctaaagtatagtttttg |
214 |
Q |
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| T |
6369420 |
tgagtttgacgaaatcacaatgacactacgattttgttgaagctctaaagtgtagcttttg |
6369360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 11070965 - 11071025
Alignment:
| Q |
153 |
gtgagtttgacgaaatcataatgacaccgtgaatttgttgaagcgctaaagtatagttttt |
213 |
Q |
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| T |
11070965 |
gtgaatttgacggaatcataatgacatcgtgattttgttgaagttctaaaatataattttt |
11071025 |
T |
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