View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_43 (Length: 246)
Name: NF4306_low_43
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_43 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32932514 - 32932745
Alignment:
| Q |
1 |
tacaataggaatgggctcttctattccgaagttcgactggaagattaataacgtctggcccaacattatttaagtaagaatttgaactcgggttttccca |
100 |
Q |
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| T |
32932514 |
tacaataggaatgggctcttgtattccgaagttcgactggaagattaataacgtctggcccaacattatttaagtaagaatttgaactcgggttttccca |
32932613 |
T |
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| Q |
101 |
aacaattcgtctttaactgaaactcattaaggagttcaatcacttggttggttaaatcgaaatagctattaaatagtgtaatgtatgtat---taatttc |
197 |
Q |
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| T |
32932614 |
aacaatttgtctttaactgaaactcattaaggagttcaatcacttggttggttaaattgaaatagctattaaatagtgtaatgtatgtattaataatttc |
32932713 |
T |
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| Q |
198 |
tacagcattgtcatggatttcttcctaaatgg |
229 |
Q |
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| T |
32932714 |
tacagcattgtcatggatttcttcctaaatgg |
32932745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 16346 - 16500
Alignment:
| Q |
80 |
atttgaactcgggttttcccaaacaattcgtctttaactgaaactcattaag-----gagttcaatcacttggttggttaaatcgaaatagctattaaat |
174 |
Q |
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| T |
16346 |
atttgacctcaggttatcccgaacaattcatctttaatttaaattcattaaacatttgagttcaatcacttgattggttaaatctaaatggctaataaat |
16445 |
T |
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| Q |
175 |
agtgtaatgtatgtattaatttctacagcattgtcatggatttcttcctaaatgg |
229 |
Q |
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| T |
16446 |
agtgtgatgcatgtattaaattctaaagcattatcaagaatttcttcctaaatgg |
16500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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