View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_44 (Length: 245)
Name: NF4306_low_44
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_44 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 5829906 - 5830132
Alignment:
| Q |
19 |
gtagtttggtgaatcaaaagggatgatagagacatggcttcttcttttttataaatcttccacttctgtataaattatataagaccttgtttgaaaagca |
118 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829906 |
gtagttaggtggatcaaaagggatgatagagacatggcttcttcttttttataaatcttccacttctgtataaattatataagaccttgtttgaaaagca |
5830005 |
T |
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| Q |
119 |
tcatttgctttataaaaacaagaacattatttgctaactaaaggtggagagaggacagggcataggcgtacacaagattagctaatgtaatgatagnnnn |
218 |
Q |
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| T |
5830006 |
tcatttgctttataaaaacaagaacattatttgctaactaaaggtggagagaggacagggcataggcgtacacaagattagctaatgtaatgatagaaaa |
5830105 |
T |
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| Q |
219 |
nnngctgctccaaaagttacctaattc |
245 |
Q |
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| T |
5830106 |
aaagctgctccaaaagttacctaattc |
5830132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 5880609 - 5880765
Alignment:
| Q |
19 |
gtagtttggtgaatcaaaagggatgatagagacatggcttcttctttt--ttataaatcttccacttctgtataaattatataagaccttgtttgaaaag |
116 |
Q |
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|||||| ||| |||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5880609 |
gtagttaggtaaatcaaaaggaatgacagagacatggcttcttcttttttttataaatcttccatttctgtataaattatataagaccttgtttgaaaag |
5880708 |
T |
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| Q |
117 |
catcatttgctttataaaaacaagaa------cattatttgctaactaaaggtggag |
167 |
Q |
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| T |
5880709 |
catcatttgctttattaaaaaaaaaaaggaagcattatttgctaactaaaggtggag |
5880765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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