View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_5 (Length: 521)
Name: NF4306_low_5
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 24 - 513
Target Start/End: Complemental strand, 50917010 - 50916521
Alignment:
| Q |
24 |
aactggtcaagtaagtatattaggtacttagagaattgtggannnnnnnn-acctttttccatctctagaaggaccagcaaataagaaatccttggctaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
50917010 |
aactggtcaagtaagtatattaggtacttagagaattgtggatttttttttacctttttcgatctctagaaggaccagcaaataagaaatccttggttaa |
50916911 |
T |
|
| Q |
123 |
agttgcggtattcgggcttgtcgctgcaaaacattacaaatcagaaggtaagatatcatctatctaagtcggctgtgtgtgcaacattnnnnnnngaaag |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
50916910 |
agttgcggtattcgggcttgtcgctgcaaaacattacaaatcagaaggtaagatatcatctatctaattcggctgtgtgtgcaacattaaaaaaagaaag |
50916811 |
T |
|
| Q |
223 |
attaaaggatatgcaatatcaatgaaaaattgttttacaccacaatcattcacaactcagcatgacaacaaacaattacataactcctatttatttaaaa |
322 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50916810 |
attaaaggatatgcaatatcaatgtaaaattgttttacaccacaatcattcacaactcagcatgacaacaaacaattacataactcctatttatttaaaa |
50916711 |
T |
|
| Q |
323 |
atgacacaatgtgaattgtgtgagatgcagggtctctttgccggaaaccatctgaagctctaataacagcagaacgctttaaactctagcaagtaaattc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50916710 |
atgacacaatgtgaattgtgtgagatgcagggtctctttgccggaaaccatctgaagctctaataacagcagaacgctttaaactccagcaagtaaattc |
50916611 |
T |
|
| Q |
423 |
attaaaataaagtcattattaatgtataaacctagaggaggtttgataaacttgagtttgtaaagaattcttacctgtacaatctatctgt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50916610 |
attaaaataaagtcattattaatgtataaacctagaggaggtttgataaacttgag-ttgtaaagaattcttacctgtacaatctatctgt |
50916521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 329 - 472
Target Start/End: Complemental strand, 42351041 - 42350899
Alignment:
| Q |
329 |
caatgtgaattgtgtgagatgcagggtctctttgccggaaaccatctgaagctctaataacagcagaacgctttaaactctagcaagtaaattcattaaa |
428 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||||| ||||||||| |||| | |||||||| |||||||| |
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| T |
42351041 |
caatgtgaattgtgtgagatgcagggtctcttggccagaaatcatctgatgctctaataacagccgaacgctttgaactgcatcaagtaaa-tcattaaa |
42350943 |
T |
|
| Q |
429 |
ataaagtcattattaatgtataaacctagaggaggtttgataaa |
472 |
Q |
| |
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|||||||| |||||| || ||||| |||||| |||||| ||||| |
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| T |
42350942 |
ataaagtccttattattgaataaatctagagtaggtttcataaa |
42350899 |
T |
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