View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4306_low_50 (Length: 238)

Name: NF4306_low_50
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4306_low_50
NF4306_low_50
[»] chr8 (8 HSPs)
chr8 (17-238)||(15722724-15722945)
chr8 (166-238)||(15813712-15813784)
chr8 (163-235)||(15697843-15697915)
chr8 (165-236)||(15712270-15712341)
chr8 (171-233)||(15800279-15800341)
chr8 (169-231)||(15704236-15704298)
chr8 (41-73)||(15697537-15697569)
chr8 (165-237)||(15805837-15805909)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 15722724 - 15722945
Alignment:
Q  17 atgtttttcttcatctaccaatcaaaatgaacattgcattcatgttattgaggaaaacagatacgcaccgctagtgctatacatatagaaaaatgctagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722724 atgtttttcttcatctaccaatcaaaatgaacattgcattcatgttattgaggaaaacagatacgcaccgctagtgctatacatatagaaaaatgctagc 15722823  T
Q  117 cctaaattggagcaagtataaaagtagattctaatcattaggattttcaaaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15722824 cctaaattggagcaagtataaaagtagattctaatcattaggattttcaaaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcata 15722923  T
Q  217 tactaatatcttttcattttct 238  Q
    ||||||||||||||||||||||    
T  15722924 tactaatatcttttcattttct 15722945  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 15813712 - 15813784
Alignment:
Q  166 aaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcattttct 238  Q
    |||| |||||||||| ||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||    
T  15813712 aaacatactgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttct 15813784  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 15697843 - 15697915
Alignment:
Q  163 tcaaaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcattt 235  Q
    ||||||| ||| |||||| ||||||||||| |||||||| |||||||| |||||||||| |||||||||||||    
T  15697843 tcaaaacataccgaaaaggtgaaagtcaaggcttgaattcggcatgtattcatatactagtatcttttcattt 15697915  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 15712270 - 15712341
Alignment:
Q  165 aaaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcatttt 236  Q
    ||||| |||||||||| |||||||| || ||||||||| |||||||||| ||||||| ||||||||||||||    
T  15712270 aaaacatactgaaaaggtgaaagtcgaggcttgaattttgcatgtactcgtatactagtatcttttcatttt 15712341  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 15800279 - 15800341
Alignment:
Q  171 tactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcat 233  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||| |||||||    
T  15800279 tactgaaaaggtgaaagtcaaggcttgaattcggcatgtactcatatactagtattttttcat 15800341  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 15704236 - 15704298
Alignment:
Q  169 cttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttc 231  Q
    |||||||||||| ||||||||||| |||||||||||| | || |||||||||| |||||||||    
T  15704236 cttactgaaaaggtgaaagtcaaggcttgaatttggcttatagtcatatactagtatcttttc 15704298  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 15697537 - 15697569
Alignment:
Q  41 aaatgaacattgcattcatgttattgaggaaaa 73  Q
    |||||||||||| ||||||||||||||||||||    
T  15697537 aaatgaacattgtattcatgttattgaggaaaa 15697569  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 15805837 - 15805909
Alignment:
Q  165 aaaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcattttc 237  Q
    ||||| ||| |||||| |||||||| || ||||||||| ||| ||| |||||||| | ||| |||||||||||    
T  15805837 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttc 15805909  T

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