View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_52 (Length: 235)
Name: NF4306_low_52
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3526307 - 3526528
Alignment:
| Q |
1 |
cactcctattatgcagtgttgtcaaatagctgatatagtggagtgaagctataacatagcatagtttgaacaaaccactattgttccttgatacgctatt |
100 |
Q |
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| T |
3526307 |
cactcctattatgcagtgttgtcaaatagctgatgtagtggagtggagctataacatagcatagtttgaacaaaccactattgttccttgatacgctatt |
3526406 |
T |
|
| Q |
101 |
tcgttcaacttagcggctatagccgatataacactacagcatagcagagttgaataaactgttatttttgcgatcagtggttgacaacattgatgttatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3526407 |
tcgttcaacttagcggctatagccgatataacactacagcatagcagagttgaataaactgttatttttgcgatcagtggttgacaacactgatgttatg |
3526506 |
T |
|
| Q |
201 |
acatcaattgtaaatatgaaat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3526507 |
acatcaattgtaaatatgaaat |
3526528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 24743021 - 24743057
Alignment:
| Q |
65 |
tttgaacaaaccactattgttccttgatacgctattt |
101 |
Q |
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| T |
24743021 |
tttgaacaaaccactattgttctgtgatacgctattt |
24743057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 7991520 - 7991556
Alignment:
| Q |
65 |
tttgaacaaaccactattgttccttgatacgctattt |
101 |
Q |
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||||||||||||||||||||||| |||||||| |||| |
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| T |
7991520 |
tttgaacaaaccactattgttccgtgatacgccattt |
7991556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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