View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_56 (Length: 227)
Name: NF4306_low_56
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 14915268 - 14915476
Alignment:
| Q |
11 |
gtacttaattgttctttaactaaaataaaacctaattatgatactttgtctattttattgtgtaggccaaaaggactcttaaaaacttgagaatcacgac |
110 |
Q |
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| T |
14915268 |
gtacttaattgttctttaactaaaataaaacctaattatgatactttgtctattttattgtgtaggccaaaaggactcttaaaaacttgagaatcacgac |
14915367 |
T |
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| Q |
111 |
tatgccgtccaaccaagagttcaaaatcactgggctgagtgaaaggccatgcaaagaccagctgtgatttttctatccaataatattttgattcttgttg |
210 |
Q |
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| T |
14915368 |
tatgccgtccaaccaagagttcaaaatcactgggctgagtgaaaggccatgcaaagaccagctgtgatttttctatccaataatatattgattcttgttg |
14915467 |
T |
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| Q |
211 |
atatgatat |
219 |
Q |
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| T |
14915468 |
atatgatat |
14915476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 38114415 - 38114548
Alignment:
| Q |
56 |
ttgtctattttatt-gtgtaggccaaaaggactcttaaaaacttgagaatcacgactatgccgtccaaccaagagttcaaaatcactgggctgagtgaaa |
154 |
Q |
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| T |
38114415 |
ttgtatattttatttgtgtaggctaaaaggactctaaagaatttgaggatcactactagcccaaccaaccaagagtacaaaattactggtttaagtgaaa |
38114514 |
T |
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| Q |
155 |
ggccatgcaaagaccagctgtgatttttctatcc |
188 |
Q |
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| T |
38114515 |
tgccatgcaaggaccagctgtaatttttctatcc |
38114548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 38122904 - 38123038
Alignment:
| Q |
54 |
ctttgtctattttattgtgtaggccaaaaggactcttaaaaacttgagaatcacgactatgccgtccaaccaagagttcaaaatcactgggctgagtgaa |
153 |
Q |
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| T |
38122904 |
ctttgtatattttactgtgtaggctaaaaggaccctcaagaatttgaggatcacagctaaaccatctaaccaagagtacaagataaccgggctgagtgaa |
38123003 |
T |
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| Q |
154 |
aggccatgcaaagaccagctgtgatttttctatcc |
188 |
Q |
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| T |
38123004 |
ttgtcgtgcaaagaccagctgtaatttttatatcc |
38123038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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