View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4306_low_7 (Length: 442)
Name: NF4306_low_7
Description: NF4306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4306_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 36450463 - 36450900
Alignment:
| Q |
17 |
actaattcttgatttgtacagaacataaaccattttccaacatttggaaagaagaaaagaccactggttactgctttgcttagtgaaatattcggatcga |
116 |
Q |
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| T |
36450463 |
actaattcttgatttgtacagaacataaaccattttccaacatttggaaagaagaaaagaccactggttactgctttgcttagtgaaatattcggat--- |
36450559 |
T |
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| Q |
117 |
tgtagtacctttttaaaatatgtgtatctttccataattaattttaggaaaggggttctgataatccgaagtttgaccgtgatataatgaaacattttaa |
216 |
Q |
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| T |
36450560 |
-gcagtacctttttaaaatatgtgtatctttccataattaattttaggaaaggggttctgataatccgaagtttgaccgtgatataatgaaacattttaa |
36450658 |
T |
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| Q |
217 |
tcaaccacacaccattcaaagattcatttatgaaacatctttttaactgcaataatataagctaaaacacaacatg----------------ccaagcat |
300 |
Q |
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| T |
36450659 |
tcaaccacacaccattcaaagattcatttatgaaacatctttttaactgcaataatataagctaaaacacaacatgccaaataaaagatgtaccaagcat |
36450758 |
T |
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| Q |
301 |
ttgttccatgtcacacctctccaattagtgcatgcatgcatctggttctttctacccttcctg-cccctaatatgcttcaatcatgataagttcaacttt |
399 |
Q |
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| T |
36450759 |
ttgttccatgtcacacctctccaattagtgcatgcatgcatctgattctttctacccttgctgccccctaatatgcttcaatcatgataagttcaacttt |
36450858 |
T |
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| Q |
400 |
ttgaaaaactaat-------tacagcatagcaaattcatctc |
434 |
Q |
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| T |
36450859 |
ttgaaaaactaattagtaagtacagcatagcaaattcatctc |
36450900 |
T |
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