View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-2 (Length: 104)
Name: NF4307-Insertion-2
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-2 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 3e-33; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 34485492 - 34485571
Alignment:
| Q |
1 |
gttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgtcaatttataaaactgtaaattaatcaa |
80 |
Q |
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| T |
34485492 |
gttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgccagtttataaaactgtaaattaatcaa |
34485571 |
T |
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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 34474176 - 34474255
Alignment:
| Q |
1 |
gttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgtcaatttataaaactgtaaattaatcaa |
80 |
Q |
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| T |
34474176 |
gttggtataattccttcattgccccatttagtttccaccaagtaggattgtgccaatttatagaactgtaaattaatcaa |
34474255 |
T |
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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34448906 - 34448982
Alignment:
| Q |
1 |
gttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgtcaatttataaaactgtaaattaat |
77 |
Q |
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| T |
34448906 |
gttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaat |
34448982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34460232 - 34460299
Alignment:
| Q |
1 |
gttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgtcaatttataaaactg |
68 |
Q |
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| T |
34460232 |
gttggaatatatcctgctttgcaccattttgcttcaaccaaataggctcgtgccactttataaaactg |
34460299 |
T |
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Target: chr4 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6131233 - 6131161
Alignment:
| Q |
1 |
gttggaataaatccttcattgcaccattttgtttcaaccaagtaggattgtgtcaatttataaaactgtaaat |
73 |
Q |
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| T |
6131233 |
gttggaataaatccttcattgcaccattttgcttcaaccaagtaggattttgccaatttataaaactgtaaat |
6131161 |
T |
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Target: scaffold0288 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 16299 - 16365
Alignment:
| Q |
14 |
cttcattgcaccattttgtttcaaccaagtaggattgtgtcaatttataaaactgtaaattaatcaa |
80 |
Q |
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| T |
16299 |
cttcattccaccattttgattcaaccaaatatgattctaccaatttataaaactgtaaattaatcaa |
16365 |
T |
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