View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4307-Insertion-24 (Length: 182)
Name: NF4307-Insertion-24
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-24 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 6e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 32468370 - 32468189
Alignment:
| Q |
1 |
aacgaggtggtttctaagatgtcgtagaatgttccattcctgtgttgcatgttgtttgaatatgtgatgtcacctaagatggtgaggtggagcattttag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
32468370 |
aacgaggtggtttctaagacatcgtagaatgttccattactctgttgcatgttgtttcaatatgtgatgtcccctaagatggtgaggtgaagcattttag |
32468271 |
T |
|
| Q |
101 |
gtatacaacgattaaatatgttgttgatttctctaaatataccaattttcatttcaatccctctaaaaatgtcctcaaagta |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32468270 |
gtatacaacgattaaatatgttgttgatttctctaaatataccaattttcatttcaatccctctaaaaatgtcctcaaagta |
32468189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 46947470 - 46947406
Alignment:
| Q |
112 |
ttaaatatgttgttgatttctctaaatataccaa-ttttcatttcaatccctctaaaaatgtcct |
175 |
Q |
| |
|
||||||||||| ||||| || |||||||||||| ||||||||| | ||||||||||||| |||| |
|
|
| T |
46947470 |
ttaaatatgtttttgatccctataaatataccaatttttcattttagtccctctaaaaatttcct |
46947406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 29400220 - 29400260
Alignment:
| Q |
112 |
ttaaatatgttgttgatttctctaaatataccaattttcat |
152 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||| |
|
|
| T |
29400220 |
ttaaatatgtttttaatttctttaaatataccaattttcat |
29400260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University