View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-25 (Length: 153)
Name: NF4307-Insertion-25
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-25 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 7e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 7e-72
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 1543483 - 1543631
Alignment:
| Q |
5 |
attattaggtggtacaataagcatatgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttg |
104 |
Q |
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| T |
1543483 |
attattaggtggtacagtaagcatatgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttg |
1543582 |
T |
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| Q |
105 |
tttccctctcaccaggtgagccctttataaatggccaagcagttccata |
153 |
Q |
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| T |
1543583 |
tttccctctcgccaggggagccctttataaatggccaagcagttccata |
1543631 |
T |
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Target: chr2 (Bit Score: 93; Significance: 1e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 32425470 - 32425593
Alignment:
| Q |
29 |
atgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttgtttccctctcaccaggtgagccct |
128 |
Q |
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| T |
32425470 |
atgtgaattctttccatagcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcacta-gtgagccct |
32425568 |
T |
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| Q |
129 |
ttataaatggccaagcagttccata |
153 |
Q |
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| T |
32425569 |
ttataaatgggcaagcagttccata |
32425593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 32421254 - 32421306
Alignment:
| Q |
101 |
tttgtttccctctcaccaggtgagccctttataaatggccaagcagttccata |
153 |
Q |
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| T |
32421254 |
tttgtttccctctcaccaggtgagcccttcattaatgggcaagcagttccata |
32421306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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