View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4307-Insertion-29 (Length: 151)
Name: NF4307-Insertion-29
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-29 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 77; Significance: 4e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 4884412 - 4884328
Alignment:
| Q |
19 |
tagtttgtattacttttaaccaaaatcaattttacagaatcaaaatcaactatcaccaccgcacaaccaaacacaagctaagatc |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4884412 |
tagtttgaattacttttaaccaaaatcaattttacagaatcaaaatcaactatcaccaccacacaaccaaacacaagctaagatc |
4884328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 10546875 - 10546922
Alignment:
| Q |
104 |
tcttatctcgggctgtgcctcttggtcttgatgagttcaagagcaggg |
151 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
10546875 |
tcttatctcgggctgtgcctcttggtcttaatgaattcaagagcaggg |
10546922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 4645940 - 4645974
Alignment:
| Q |
27 |
attacttttaaccaaaatcaattttacagaatcaa |
61 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
4645940 |
attacttttaaccaaaataaattttacagaatcaa |
4645974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 30031990 - 30031939
Alignment:
| Q |
100 |
gatctcttatctcgggctgtgcctcttggtcttgatgagttcaagagcaggg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30031990 |
gatctcttatctcgggctgtgcctcttggtcttgatgagttcaagagcaggg |
30031939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 30557626 - 30557657
Alignment:
| Q |
30 |
acttttaaccaaaatcaattttacagaatcaa |
61 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
30557626 |
acttttaaccaaaatcaattctacagaatcaa |
30557657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 4074260 - 4074220
Alignment:
| Q |
19 |
tagtttgtattacttttaaccaaaatcaattttacagaatc |
59 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
4074260 |
tagtttgaatcacttttaaccaaaatcaattttaaagaatc |
4074220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 15928422 - 15928391
Alignment:
| Q |
27 |
attacttttaaccaaaatcaattttacagaat |
58 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
15928422 |
attacttttaaccaaaatcaattctacagaat |
15928391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University