View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-30 (Length: 232)
Name: NF4307-Insertion-30
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-30 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 49201835 - 49201612
Alignment:
| Q |
9 |
aaaagcccttaattaggatgatgcaatgcaagtattaggtttatatcagtagtaacttttattgcgtgattgatgtgtttgattcaccagtcttttatta |
108 |
Q |
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| T |
49201835 |
aaaagcccttaattaggatgatgcaatgcaagtattaggtttatatcagtagtaccttttattgtgtgattgatgtgtttgattcaccagtcttttatta |
49201736 |
T |
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| Q |
109 |
gttttaggttcaaactattatgttatatgacaatttaatttacatttttacatgcatggtannnnnnngaatgcacttttggtgtttaaaacaaaactct |
208 |
Q |
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| T |
49201735 |
gttttaggttcaaactattatgttatatgacaatttaatttacatttttacatgcatggtatttttttgaatgcacttttggtgtttaaaacaaaactct |
49201636 |
T |
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| Q |
209 |
tgacagggactaacatcaatgata |
232 |
Q |
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|||||||||||||||||||||||| |
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| T |
49201635 |
tgacagggactaacatcaatgata |
49201612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 49206771 - 49206587
Alignment:
| Q |
34 |
atgcaagtattaggtttatatcagtagtaacttttattgcgtgattgatgtgtttgattcaccagtcttttattagttttaggttcaa---actattatg |
130 |
Q |
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| T |
49206771 |
atgcaagtattaggtttacaatagcagtaccttttattgtgtgat--atgtgttttattcaccagtcttttattagttttaggttcaaactactactatg |
49206674 |
T |
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| Q |
131 |
ttatatgacaatttaatttacatttttacatgcatggtannnnnnngaatgcacttttggtgtttaaaacaaaactcttgacagggac |
218 |
Q |
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| T |
49206673 |
tcatatgatgatttagtttacatttttacatgcttggta-ttttttgaatggaattttggcgtttaaaacaaaacttctgacagggac |
49206587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 52267455 - 52267516
Alignment:
| Q |
9 |
aaaagcccttaattaggatgatgcaatgcaagtattaggtttatatcagtagtaacttttatt |
71 |
Q |
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|||||| ||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||| |
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| T |
52267455 |
aaaagctcttaattaggaggatgcaa-gcaagtattaggtttatagtagtagtaccttttatt |
52267516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 37029918 - 37029859
Alignment:
| Q |
99 |
tcttttattagttttaggttcaaactattatgttatatgacaatttaatttacattttta |
158 |
Q |
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| T |
37029918 |
tcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacattttta |
37029859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 26755863 - 26755757
Alignment:
| Q |
64 |
cttttattgcgtgattgatgtgtttgattcaccagtcttttattagttttaggttcaaactattatgttatatgac-aatttaatttacatttttacatg |
162 |
Q |
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| T |
26755863 |
cttttattgtgtgatacatgtgactgattcactagtctttttatagtttcaggttttaaatcttatgttatatgcttaatttaatttacatttttatatg |
26755764 |
T |
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| Q |
163 |
catggta |
169 |
Q |
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| T |
26755763 |
cttggta |
26755757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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