View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-31 (Length: 263)
Name: NF4307-Insertion-31
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 9086825 - 9087078
Alignment:
| Q |
10 |
aatatagatagttttctgtattcttttgcgtttaaaacattcaatgtcacgtttggagctgttggtgttccatctacatttcatgccttttgcttcacat |
109 |
Q |
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| T |
9086825 |
aatatagatagttttccgtattcttttgcggttaaaacattcaatgtcacgtttggagctgttggtgttccatctacatttcatgccttttgcttcacat |
9086924 |
T |
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| Q |
110 |
acatcacaatttgttttgggccaactcaaagagaagttattagtcgacaggtgatttgcatcgatagttgcgctgacttcaatcatcttggtacataatg |
209 |
Q |
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| T |
9086925 |
acatcacaatttgttttgtgccaactcaaagagaagctattagtcgacaggtgatttgcatcgatagttgcgctgacttcaatcatcttggtacatgatg |
9087024 |
T |
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| Q |
210 |
caaggtccaacttgacgacacttacatcagaataagaagcgtaaattggacaag |
263 |
Q |
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| T |
9087025 |
caaggtccaacttgacgacactttcatcagaataagaagcgtaaattggacaag |
9087078 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 9126005 - 9126100
Alignment:
| Q |
44 |
aaacattcaatgtcacgtttggagctgttggtgttccatctacatttcatgccttttgcttcacatacatcacaatttgttttgggccaactcaaa |
139 |
Q |
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| T |
9126005 |
aaacattcaatgtcacatttggtgccgttgttattccatctacatttcatgcctttcgcctcacagacagtacaatttggatttggccaactcaaa |
9126100 |
T |
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