View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-32 (Length: 260)
Name: NF4307-Insertion-32
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 41035566 - 41035826
Alignment:
| Q |
1 |
tctacatcagcttttctatcttaacttcaatttgacttaagcctgtccaagttatacactttctgcaaaataaataaatattcatcaggtaagtatatga |
100 |
Q |
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| T |
41035566 |
tctacatcagcttttctatcttaacttcaatttgacttaagcctgtccaagttatacactttctgcaaaataaataaatattcatcgggtaagtatatga |
41035665 |
T |
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| Q |
101 |
caggaaatccaacgaccatgaccaattgatgttaagtcagaaagcataaaatcaagcttactagaatacaatggatatcctcaagaaaaggcacaagcaa |
200 |
Q |
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| T |
41035666 |
caggaaatccaacgaccatgaccaattgatgttaagtcagaaagcataaaatcaagcttactagaatacaatggatatcctcaagaaaaggcacaagcaa |
41035765 |
T |
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| Q |
201 |
agaaactaaaatctccattttttccatta-ggtgttgctgtcttcgtctttttcccggagg |
260 |
Q |
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| T |
41035766 |
agaaactaaaatctccattttttccattagggtgttgcagtcttcgtctttttcccggagg |
41035826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 9873179 - 9873123
Alignment:
| Q |
150 |
aatcaagcttactagaatacaatggatatcctcaagaaaaggcacaagcaaagaaac |
206 |
Q |
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| T |
9873179 |
aatcaagcttactaggatacagtggatatcctcaagaaaaggcacaaacagagaaac |
9873123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 9880282 - 9880210
Alignment:
| Q |
149 |
aaatcaagcttactagaatacaatggatatcctcaagaaaaggcacaagcaaagaaactaaaatctccatttt |
221 |
Q |
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||||||||||||||| |||||| |||||||| ||||||||||||||||| | |||||| || |||| |||||| |
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| T |
9880282 |
aaatcaagcttactaaaatacagtggatatcttcaagaaaaggcacaagtagagaaaccaatatctgcatttt |
9880210 |
T |
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