View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-40 (Length: 224)
Name: NF4307-Insertion-40
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 224
Target Start/End: Complemental strand, 38850750 - 38850532
Alignment:
| Q |
6 |
ttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850750 |
ttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactca |
38850651 |
T |
|
| Q |
106 |
acttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaacta |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38850650 |
acttgttttgcaaaatggtttgttatgtgatggagagttctttcatgtgaattgttttgcacgcgttttaaatcagatagttgaagaagcgttaaaacta |
38850551 |
T |
|
| Q |
206 |
gttagctgtggtgtgcata |
224 |
Q |
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||||||||||||||||||| |
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| T |
38850550 |
gttagctgtggtgtgcata |
38850532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 38313186 - 38313388
Alignment:
| Q |
6 |
ttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactca |
105 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||| ||| |
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| T |
38313186 |
ttgagtttttgagtgattggggaatagagaaaaagattttctctctcactttagatgattcatctgagaatgacattttgcaagaacaattaaaaaatca |
38313285 |
T |
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| Q |
106 |
acttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaacta |
205 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||| |||| |||||||||| | ||||||||| | ||| ||||| |||| |||||||||| |
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| T |
38313286 |
actttgtttgcaaaatgggttgttatgtgatggagagttctttcatgtgcattgttttgcccgcgttttaaacctgattgttgatgaagggttaaaacta |
38313385 |
T |
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| Q |
206 |
gtt |
208 |
Q |
| |
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||| |
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| T |
38313386 |
gtt |
38313388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 38320690 - 38320894
Alignment:
| Q |
6 |
ttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactca |
105 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
38320690 |
ttgagtttttgagtgattggggaatagagaaaaagatcttctctctcactttagatgattcatctgagaatgacattttgcaagaactattgaaaactca |
38320789 |
T |
|
| Q |
106 |
acttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaacta |
205 |
Q |
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||||| |||||||||||| |||||||||||||| |||||||||| | | |||||| ||||| |||||||| ||| |||||||| | ||| |||||| |
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| T |
38320790 |
acttggtttgcaaaatgggttgttatgtgatggggagttctttcacgggcattgttatgcacgtgttttaaaattgattgttgaagaggggttgaaacta |
38320889 |
T |
|
| Q |
206 |
gttag |
210 |
Q |
| |
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||||| |
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| T |
38320890 |
gttag |
38320894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 38316594 - 38316799
Alignment:
| Q |
5 |
attgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactc |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| | || ||| |||||||||||||| || |
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| T |
38316594 |
attgaattgttgaatgattggggaatagagaaaaagattttctctctcactttagatgattcatttgagaataatgttatgctagaacaattgaaaaatc |
38316693 |
T |
|
| Q |
105 |
aacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaact |
204 |
Q |
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||||| ||||| |||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||| | ||| | |||||| | ||||||||| |
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| T |
38316694 |
aactttgtttgcgaaatgggttgttatgtgatggagagttctttcatgctcattgttttgcatgcgttttaaaactgattgctgaagaggggttaaaact |
38316793 |
T |
|
| Q |
205 |
agttag |
210 |
Q |
| |
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|||||| |
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| T |
38316794 |
agttag |
38316799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 38299945 - 38300149
Alignment:
| Q |
6 |
ttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactca |
105 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| | ||||| | |||||||||||| |||| ||| ||| |
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| T |
38299945 |
ttgagttcttgaatgattggggaatagaggaaaagattttctctctcactttagaagattcatttaagaataaaattttgcaagaaaaatttcaaaatca |
38300044 |
T |
|
| Q |
106 |
acttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaacta |
205 |
Q |
| |
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|||||||||||| ||||| ||||||||||| || |||||||||| | | |||||||||||| | ||||||| | ||| |||||||| | ||| |||||| |
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| T |
38300045 |
acttgttttgcataatgggttgttatgtgacggggagttctttcacgggcattgttttgcacgcattttaaaactgattgttgaagaggggttgaaacta |
38300144 |
T |
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| Q |
206 |
gttag |
210 |
Q |
| |
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||||| |
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| T |
38300145 |
gttag |
38300149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 38325439 - 38325644
Alignment:
| Q |
5 |
attgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactc |
104 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |||||| | || | ||||||||||||||| ||| |
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| T |
38325439 |
attgaattgttgaatgattggggaatagagaaaaagattttttctcttactttagatgattcagtcgagaataatgttctacaagaacaattgaaatctc |
38325538 |
T |
|
| Q |
105 |
aacttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaact |
204 |
Q |
| |
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| |||| |||||||||||| ||||| ||||||||||||||||||| | | | |||||||||| |||||||||| ||| |||||||| | ||| ||||| |
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| T |
38325539 |
atcttggtttgcaaaatgggttgttgtgtgatggagagttctttcacgggcactgttttgcacgtgttttaaatctgattgttgaagacgggttgaaact |
38325638 |
T |
|
| Q |
205 |
agttag |
210 |
Q |
| |
|
|||||| |
|
|
| T |
38325639 |
agttag |
38325644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 38305864 - 38306068
Alignment:
| Q |
6 |
ttgagttgttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactca |
105 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||| | | || || |||| | || | | |||||||||||||| |||||| |||| |
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| T |
38305864 |
ttgagtttttgagtgattggggaatagagaaaaagattttctctctcaatttagaggactcatttaaggacaacattttgcaagaacagttgaaatctca |
38305963 |
T |
|
| Q |
106 |
acttgttttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaacta |
205 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||| | ||| |||||||| | |||||||||| |
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| T |
38305964 |
tcttggtttggaaaatggtttgttatgtgatggagagttctttcacaggcattgttctgcacgcgttttaaaactgattgttgaagaggggttaaaacta |
38306063 |
T |
|
| Q |
206 |
gttag |
210 |
Q |
| |
|
||||| |
|
|
| T |
38306064 |
gttag |
38306068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 38308599 - 38308796
Alignment:
| Q |
13 |
gttgaatgattggggaatagagaaaaagattttctctctcactattgatgattcatctgagaatgagattttgcaagaacaattgaaaactcaacttgtt |
112 |
Q |
| |
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|||||||||||||||| |||||||||||||||| || | ||| | |||||||||| ||||||| | || ||||| |||||||||| |||||||||| | |
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|
| T |
38308599 |
gttgaatgattggggagtagagaaaaagattttttcatttactttagatgattcatttgagaataatgttctgcaacaacaattgaagactcaacttggt |
38308698 |
T |
|
| Q |
113 |
ttgcaaaatggtttgttatgtgatggagagttctttcgtgtgaattgttttgcactcgttttaaatcagatagttgaagaagcgttaaaactagttag |
210 |
Q |
| |
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||| ||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||| | ||| |||||||| | || ||||||||||| |
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| T |
38308699 |
ttggaaaatgggttgttatgtgatggagagttctttcatgctcattgttttgcacatgttttaaaactgattgttgaagaggggtgtaaactagttag |
38308796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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