View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307-Insertion-7 (Length: 60)
Name: NF4307-Insertion-7
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 52; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 21111411 - 21111462
Alignment:
| Q |
9 |
aaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtg |
60 |
Q |
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| T |
21111411 |
aaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtg |
21111462 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 14241981 - 14242030
Alignment:
| Q |
11 |
aagaatatctttccttcctgagattatcaatgacttaaccaacttaagtg |
60 |
Q |
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| T |
14241981 |
aagaatttctttccaccctgagattatcaatgacttaaccaacttaagtg |
14242030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 41452993 - 41453045
Alignment:
| Q |
8 |
aaaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtg |
60 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
41452993 |
aaaaagaatctctttccaccctgagattatcaatgacttaactaacttaagtg |
41453045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 41439825 - 41439876
Alignment:
| Q |
9 |
aaaagaatatctttccttcctgagattatcaatgacttaaccaacttaagtg |
60 |
Q |
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|||||||| ||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
41439825 |
aaaagaatctctttccaccctgagattattaatgacttaactaacttaagtg |
41439876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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