View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_high_10 (Length: 238)
Name: NF4307_high_10
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 42619803 - 42619648
Alignment:
| Q |
66 |
gagcacattagacctaactcattgtgttcgggttgagtcgagttacaagaccaggtcggattccatacacctctaacaagagccggcagattctaacatt |
165 |
Q |
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| T |
42619803 |
gagcacattagacctaactcattgtgttcgggttgagtcgagttacaagaccaggtcggattccatacacctctaacaagagccggcagattctaacatt |
42619704 |
T |
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| Q |
166 |
taaaaagtgcaacatgtaggtaaaagcatttttctcattaatgagcactaattttt |
221 |
Q |
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| T |
42619703 |
taaaaaatgcaacatgtaggtaaaagcatttttctcattaatgaacactaattttt |
42619648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42619869 - 42619828
Alignment:
| Q |
1 |
ttaaaactagtgtgttaacccgtgcaatgca-catagactac |
41 |
Q |
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| T |
42619869 |
ttaaaactagtgtattaacccgtgcaatgcaccatagactac |
42619828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 30739536 - 30739564
Alignment:
| Q |
4 |
aaactagtgtgttaacccgtgcaatgcac |
32 |
Q |
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| T |
30739536 |
aaactagtgtgttaacccgtgcaatgcac |
30739564 |
T |
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