View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_high_3 (Length: 491)
Name: NF4307_high_3
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Original strand, 14589824 - 14590286
Alignment:
| Q |
10 |
attattcttcaaatcccaaatgaaatacacaccgacacatactactagtactaacgtgccgtttacacctaaaggtacaaattacagaacagaaccacaa |
109 |
Q |
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| T |
14589824 |
attattctccaaatcccaaatgaaatacacaccgacacatactactagtactaacgtgccgtttacacctaaaggtacaaattacagaacagaaccacaa |
14589923 |
T |
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| Q |
110 |
actttcatggagggccatgtgaacgtgattgattgtattgtgtagcttacatcctgacggtgacacgtggcaaatcatattatgagaggtagatgataac |
209 |
Q |
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| T |
14589924 |
actttcatggagggccatgtgaacgtgattgattgtattgtgtagcttgcatcctgacggcgacacgtggcaaatcatattattagaggtggatgataac |
14590023 |
T |
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| Q |
210 |
aagggagactcacctcacctccgtggtatgggcacacatagcttttagaggatgctgccacgtttgagacttgaaatcagagtctatattggacctaccg |
309 |
Q |
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| T |
14590024 |
aagggagactcacctcacctccgtggtatgggcagacatagattttagaggatgct---acggttgagatttgaaatcagagtctatattggacctaccg |
14590120 |
T |
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| Q |
310 |
tgagtattgatatttattataagtatgaatcatatcataaaagcgaaatacatgtgaaatctatatcaattggcaacatggttatattattaagtttgac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14590121 |
tgagtattgatatttattataagtatgaatcatatcataaaagctaaatacatttgaaatctatatcaattgacaacatggttatattattaagtttgac |
14590220 |
T |
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| Q |
410 |
attttgatttaattttgaatgtcaagaccaattgatttttatgccatatttgtaaaacctaatttt |
475 |
Q |
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| T |
14590221 |
attttgatttaattttgaatgtcaagaccaattgatttttatgcgatatttgtaaaacctaatttt |
14590286 |
T |
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