View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_high_5 (Length: 338)
Name: NF4307_high_5
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 116 - 332
Target Start/End: Complemental strand, 36162037 - 36161823
Alignment:
| Q |
116 |
ttcatatactttactttcactcgtttttcatacacaagatcgaatcaaggctctcaataccaatagttaagaacaat-gtggtttgcacacacactctct |
214 |
Q |
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| T |
36162037 |
ttcatatactt-actttcactcgcttttcttacacaagatcgaatcaaggctctcaataccaatagttaagaacaatagtggtttgcacacacactctct |
36161939 |
T |
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| Q |
215 |
ttatacacaaagaagaacaatattgaaaatatccttgtatattggcatgcatcttgttgagtcccacatcgatctaattattaggctcattcaatttgta |
314 |
Q |
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| T |
36161938 |
ttatacaca--gaagaatactattgaaaatatccttgtatattggcatgcatcttgttgagtcccacatcgatctaattattaggctcattcaatttgta |
36161841 |
T |
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| Q |
315 |
actaactcaagaaccaac |
332 |
Q |
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| T |
36161840 |
actaactcaagaaccaac |
36161823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 36153144 - 36153024
Alignment:
| Q |
200 |
gcacacacactctctttatacacaaagaagaacaatattgaaaatatc-cttgtatattggcatgcatcttgttgagtcccacatcgatctaattattag |
298 |
Q |
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| T |
36153144 |
gcacacacactctctttatacacaaagaagaatattattgaaaatatctcttgtatattggcatgcatcttgttgaatcccacatcaatctaattattag |
36153045 |
T |
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| Q |
299 |
gctcattcaatttgtaactaa |
319 |
Q |
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| T |
36153044 |
gctcattcaatttgtaactaa |
36153024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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