View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4307_high_6 (Length: 285)
Name: NF4307_high_6
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 42332282 - 42332505
Alignment:
| Q |
46 |
taaacactgcatatcaaatatgaattgagtagtttacatacttaaataattaatataaataataaatgctaacaaaattgagaggttggatcactcgatc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42332282 |
taaacactgcatatcaaatatgaattgagtagtttacttacttaaataattaatataaataataaatgctaacaaaattgagaggttggatcactcgatc |
42332381 |
T |
|
| Q |
146 |
gatttgagttaagagtggaatgaatcgggagagttaagagattgaggttggaacctggtgaaagagaaaaatacagatgaatgtacaaaataattagtaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42332382 |
gatttgagttaagagtggaatgaatcgggagagttaagagattgaggttggaacctggtgaaagagaaaaatacagatgaatgtacaaaataattattaa |
42332481 |
T |
|
| Q |
246 |
ttaactttggatatatataaaagt |
269 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42332482 |
ttaactttggatatatataaaagt |
42332505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University