View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4307_high_9 (Length: 242)
Name: NF4307_high_9
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43862736 - 43862510
Alignment:
| Q |
1 |
tgcacattctaatggttgttaattacgttgatcttcaaaattaaataagcgtcgttaattttggattggttcgaaacaattaaacaggacttattcatag |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862736 |
tgcacattctaatggttgttaattatgttgat-ttcaaaattaaataagcatcgttaatttttt-ttggttcgaaacaattaaacaggacttattcatag |
43862639 |
T |
|
| Q |
101 |
ctggaagtgacacatcaggatcaacaactgaatgggcaatggcagagcttctccgcaatccaaacataatgaaaaaagcaagaaatgaagtgattcaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43862638 |
ctggaagtgacacatcaggatcaacaactgaatgggcaatggcagagcttctccgcaatccaaacataatgaaaaaagcaagaaatgaagtgattcaact |
43862539 |
T |
|
| Q |
201 |
aattcccaaatccaaccaagtcaaagaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43862538 |
aattcccaaatccaaccaagtcaaagaat |
43862510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University