View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4307_low_12 (Length: 222)

Name: NF4307_low_12
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4307_low_12
NF4307_low_12
[»] chr4 (15 HSPs)
chr4 (9-206)||(6813672-6813869)
chr4 (9-206)||(6713709-6713906)
chr4 (9-206)||(6750745-6750942)
chr4 (9-206)||(6794342-6794539)
chr4 (9-206)||(6672553-6672750)
chr4 (9-202)||(6535524-6535717)
chr4 (9-206)||(6725828-6726025)
chr4 (9-205)||(6624301-6624497)
chr4 (9-207)||(6648952-6649150)
chr4 (8-205)||(6756364-6756561)
chr4 (9-204)||(6500220-6500415)
chr4 (45-202)||(6547811-6547968)
chr4 (9-206)||(6589909-6590106)
chr4 (9-163)||(6834115-6834269)
chr4 (38-205)||(8412762-8412929)
[»] scaffold0373 (1 HSPs)
scaffold0373 (9-206)||(11764-11962)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6813869 - 6813672
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||     
T  6813869 acatcatcaagcacaagaagtaccttcttctgggaaagtctttccttcaatatatttttccctgattcgatgtcatgtatcttgaatgccgttgttttgc 6813770  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6813769 aaacatcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaagttccctaatgttcagaagaaagctccttccctcaaatttg 6813672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6713906 - 6713709
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||||||||||| | | ||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |  |||||||||||    
T  6713906 acatcatcaagcacaagaagtacccttttctgagcaagtctttccttcaataaatttttccctgattcaatgtcaagtatcttgagttctgttgttttgt 6713807  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6713806 aaacatcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaacttccctaatgtttagaagaaagctccttccctcaaatttg 6713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6750942 - 6750745
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||||||||||| | | |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||    
T  6750942 acatcatcaagcacaagaagtaccctattctgggcaagtctttgcttcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgt 6750843  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    |||||||||| |||| |||||||||||| |||| ||||||||||| ||||||||||| |||||| || | || ||| |||||||||||||||||||||    
T  6750842 aaacatcacagagtacttgttgctgtagtgaaacttgattagtatgtgtctcccaaaattcccttatatccataaggaagctccttccctcaaatttg 6750745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6794539 - 6794342
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||   || |||||    
T  6794539 acatcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgt 6794440  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    ||||||||  |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  6794439 aaacatcatgaagtatctgttgctgtagagaaacttgattagtatctgtgtcccaaacttccctaatgttcaaaaggaagctccttccctcaaatttg 6794342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6672750 - 6672553
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  6672750 acatcatcaagcacaagaagtaccttgctctgggcaagtctttccttcagtatatttttccttgattctatgtcacgtatcttgaatgtcgttgttttgt 6672651  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    | |||||||||||||  |||||||||||||||| | ||||| ||  ||||||||||| |||||| ||  ||||||| |||||||||||||||||||||    
T  6672650 agacatcacaaagtacctgttgctgtagagaaactagattaatacatgtctcccaaaattcccttataatcagaaggaagctccttccctcaaatttg 6672553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 6535524 - 6535717
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    ||||||||||| |||| || |||| | | ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  6535524 acatcatcaagtacaaaaaatacccttttctgggaaagtctttgcttcaatatatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgt 6535623  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaa 202  Q
    ||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||| |||||| || |||||||| |||||| |||| |||||    
T  6535624 aaacatcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccatcaaa 6535717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 6726025 - 6725828
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||| ||||||||||||||  |   ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||    
T  6726025 acatcatctagcacaagaagtacactagtctgggaaagtctttccttcaatatatttttccctgattctatgtcacgtatcttgaatgttaatgttttgt 6725926  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    |||||||||||||||  | |||||||||||||| | |||| |||| ||||||||||| |||||| || || |||| ||||||||||||||||||||||    
T  6725925 aaacatcacaaagtaccttttgctgtagagaaactagattggtatttgtctcccaaaattccctgatatttagaacaaagctccttccctcaaatttg 6725828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 6624301 - 6624497
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  ||||||||||    
T  6624301 acatcatcaagcacaagaagtaccctattctgggcaagtctttccttcaatatatttttccctgattcgatatcgcgtatcttgaatgccgttgttttgt 6624400  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaattt 205  Q
    |||||||||||||||||||||| || |||||||  ||||| | ||||||||| |||| ||| || || |||| ||||||||||| ||| || |||||    
T  6624401 aaacatcacaaagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaagaaagctccgtccatcgaattt 6624497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 6649150 - 6648952
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||| ||||||| | | ||||| ||||||||| |||||| |||||||||||||||| |||||||||||||||||||| || |||||||    
T  6649150 acatcatcaagcacaataagtaccctattctgggaaagtctttctttcaatgtatttttccctgattctatgtcacgtatcttgaatgtcgtagttttgt 6649051  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttgt 207  Q
    ||||||||||||| | |||||| |||||||||| | ||||| ||| ||||||||||| ||| || || |||||||| |||||||| |||||||||||||    
T  6649050 aaacatcacaaagaagttgttgttgtagagaaactagattaatatttgtctcccaaaattctcttatattcagaaggaagctcctcccctcaaatttgt 6648952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 6756561 - 6756364
Alignment:
Q  8 gacatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttg 107  Q
    ||||||||||||||| ||||||||| | | |||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |    
T  6756561 gacatcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcg 6756462  T
Q  108 taaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaattt 205  Q
    ||| |||| || ||||  ||||| ||||| |||| |||||||||||||||||||||||  || || || |||||||| ||||||||||||||||||||    
T  6756461 taagcatcgcagagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagctccttccctcaaattt 6756364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 6500220 - 6500415
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||| ||||||||| | ||| | |||||||| | ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||    
T  6500220 acatcatcaagcacaaaaagtacctttttctgagaaagtctttgcctcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgt 6500319  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatt 204  Q
    ||||||||||||| |  | ||||||||| |||| ||||||||||||||| |||||||  ||||| || |||||||| |||||||| ||||||||||    
T  6500320 aaacatcacaaagcaccttttgctgtagtgaaacttgattagtatctgtttcccaaaactcccttatattcagaaggaagctcctaccctcaaatt 6500415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 6547811 - 6547968
Alignment:
Q  45 agtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgtaaacatcacaaagtatttgttgctgtagagaaattt 144  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||| |||| ||    
T  6547811 agtctttcctttaatgtatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgtaaacatcacaaagtacttgttgctgtagtgaaactt 6547910  T
Q  145 gattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaa 202  Q
    |||||||| |||||||||||| |||||| || |||||||| |||||| |||| |||||    
T  6547911 gattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccgtcaaa 6547968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 6589909 - 6590106
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||| ||||||||| ||| | | ||||| |||| |||||||||| |||||||| |||||||| |  |||||||||||||||||   ||||||||    
T  6589909 acatcatcaaacacaagaagaaccctattctgggaaagtttttccttcaacatatttttgcctgattctagatcacgtatcttgaatgtcaatgttttgt 6590008  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    ||||||||  |||||| | |||||||||||||| ||||||||||||||||||||| |  || || || ||||||||||||||||||||||||||||||    
T  6590009 aaacatcatcaagtatcttttgctgtagagaaacttgattagtatctgtctcccataactctcttatattcagaagaaagctccttccctcaaatttg 6590106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 6834269 - 6834115
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||| ||| ||| | | ||| |||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  6834269 acatcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgt 6834170  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtctccca 163  Q
    |||||||||||||||  |||||||| || |||| | ||||||||| |||||||||    
T  6834169 aaacatcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctccca 6834115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 8412929 - 8412762
Alignment:
Q  38 ctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgtaaacatcacaaagtatttgttgctgtaga 137  Q
    |||||||||||||||||||| |||| ||||||||||| | |||||| |||||||| ||||   ||||||||||| |||||||||||   |||||||||||    
T  8412929 ctgggcaagtctttccttcagtatacttttccctgatactatgtcatgtatcttgtatgtcaatgttttgtaaaaatcacaaagtaccagttgctgtaga 8412830  T
Q  138 gaaatttgattagtatctgtctcccaaacttccctaatgttcagaagaaagctccttccctcaaattt 205  Q
    |||| | ||||||||| | ||||||||| |||||| || || ||||  |||| | |||||||||||||    
T  8412829 gaaactagattagtatttttctcccaaaattcccttatatttagaacgaagcactttccctcaaattt 8412762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 11764 - 11962
Alignment:
Q  9 acatcatcaagcacaagaagtaccttctgctgggcaagtctttccttcaatatatttttccctgattcgatgtcacgtatcttgaatgttgttgttttgt 108  Q
    |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||   || |||||    
T  11764 acatcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgt 11863  T
Q  109 aaacatcacaaagtatttgttgctgtagagaaatttgattagtatctgtct-cccaaacttccctaatgttcagaagaaagctccttccctcaaatttg 206  Q
    ||||||||  |||||| |||||||||| | ||| ||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  11864 aaacatcatgaagtatctgttgctgtacacaaacttgattagtatctgtgtccccaaacttccctaatgttcaaaaggaagctccttccctcaaatttg 11962  T

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