View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_low_2 (Length: 613)
Name: NF4307_low_2
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 3088187 - 3087592
Alignment:
| Q |
1 |
tcctcatggcagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaataagagcacatgacaaaaataactac |
100 |
Q |
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| T |
3088187 |
tcctcaaggcagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaatatgagcacatgacaaaaataactac |
3088088 |
T |
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| Q |
101 |
atatacaaatagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgaagtggacttgtccatctatatttgtaccagtgcc |
200 |
Q |
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| T |
3088087 |
atatacaaatagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgtagtggacttgtccatctatatttgtaccagtgcc |
3087988 |
T |
|
| Q |
201 |
taatttgatcaggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgc |
300 |
Q |
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| T |
3087987 |
taatttgatcaggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgc |
3087888 |
T |
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| Q |
301 |
ctatcaatcatatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttatt |
400 |
Q |
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| T |
3087887 |
ctatcaatcatatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttatt |
3087788 |
T |
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| Q |
401 |
cataaccagcttgacaatcatttgatacattagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacg |
500 |
Q |
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| T |
3087787 |
cataaccagcatgacaatcatttgatacattagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacg |
3087688 |
T |
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| Q |
501 |
tgatttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtgatttgaccataaatagttatgtttcgctt |
596 |
Q |
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| T |
3087687 |
tgatttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtgatttgaccataaatagttatgtttcgctt |
3087592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 477 - 567
Target Start/End: Complemental strand, 3087646 - 3087556
Alignment:
| Q |
477 |
aattgtttttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtg |
567 |
Q |
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| T |
3087646 |
aattgattttaggttagtgatacgtgatttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtg |
3087556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 34922119 - 34922185
Alignment:
| Q |
484 |
tttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattt |
550 |
Q |
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| T |
34922119 |
tttaggttagttaaacttgatttgactataaattgttatgtttggcttccgactttggaattgattt |
34922185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 531
Target Start/End: Original strand, 34898736 - 34898768
Alignment:
| Q |
499 |
cgtgatttgactataaatagttatgtttcgctt |
531 |
Q |
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| T |
34898736 |
cgtgatttgactataaattgttatgtttcgctt |
34898768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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