View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_low_4 (Length: 390)
Name: NF4307_low_4
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 31009353 - 31009731
Alignment:
| Q |
1 |
tatgcttttctatgtgtcatttatcatgtaccattgcataatactccttatatacgctcttcataggattgaatcggtcgtagagttacccaagataaat |
100 |
Q |
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| T |
31009353 |
tatgcttttctctgtttcatttctcatttaccactgcatgatgctccttatatacactcgtcgtaggcttgaatccgtcgtagggttccccaaaataaat |
31009452 |
T |
|
| Q |
101 |
tcttttggtgatttaggctatgcaacaagtggccagtttggaagattgtgcgttgatattatggtttttcttatgcaatgtggtttttgtgttagctacc |
200 |
Q |
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| T |
31009453 |
tcttttggtgatttaggctatgcaacaagtggccattttggaagattgtgcgttgatatcatggtttttcttatgcaatgtggtttttgtgttagctacc |
31009552 |
T |
|
| Q |
201 |
ttatttttatttccactactttgatacatcttagtcataatacaaactcatcatctttattgggtttttcaccaaaggnnnnnnnnatttgggcttgttt |
300 |
Q |
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| T |
31009553 |
ttatttttatttccactactttgatacatcttagtcacaatacaaactcatcatctttattgggtttttcaccaaaggttttttttatttgggcttgttt |
31009652 |
T |
|
| Q |
301 |
cccttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgat |
379 |
Q |
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| T |
31009653 |
cccttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgat |
31009731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 9783041 - 9782950
Alignment:
| Q |
288 |
tttgggcttgtttcccttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgat |
379 |
Q |
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|||||| |||||| || |||||||| || |||||| | || || |||||| ||||| || ||||||||||| |||||||||||||||||| |
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| T |
9783041 |
tttggggttgttttccatttcaattagggttgaattcgatcaaaactttgacccatttagcccctttgagtatttttgctgatgttgttgat |
9782950 |
T |
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