View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_low_7 (Length: 275)
Name: NF4307_low_7
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 43862753 - 43863018
Alignment:
| Q |
1 |
aatgtacgtgaacgatgtaaacctcatatcaccaaagttaggttnnnnnnnnnnnnnnnnnnnnntgaagttggaaactacaaccagtagtctaagtcta |
100 |
Q |
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| T |
43862753 |
aatgtacgtgaacgatgtaaacctcatatcaccaaagttaggttaaaaaatcaacaaaacaaaaatgaagttggaaactacaactagtagtctaagtcta |
43862852 |
T |
|
| Q |
101 |
ctatttatcgttgaaaattgaaactaacannnnnnn-aaacaagtcgaaattaacactcaattgaatattgaaatttgagagcatagtaatggttgtgga |
199 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862853 |
ctatttatcgttgaaaattgaaactaacattttttttaaacaagtcgaaattaacactcaattgaatattgaaatttgagagcatagtaatggttgtgga |
43862952 |
T |
|
| Q |
200 |
tgatacacgtaaaaaattattggaccgtgcacatcctgactgactcccaattattcataagtataat |
266 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||| |
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| T |
43862953 |
tgatacacgtaaaaaattattggatcgtgcatatcctgacttact-ccaattattcataagtataat |
43863018 |
T |
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