View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4307_low_8 (Length: 251)
Name: NF4307_low_8
Description: NF4307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4307_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 5478846 - 5479055
Alignment:
| Q |
10 |
aagaaaatgaaaccttaaatgaaacattttagtttctgcgtccttgtaatattttaagggtaaatgcttcctttgttagttgtccttgaggcttttagtt |
109 |
Q |
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| T |
5478846 |
aagaaaatgaaaccttaaatgaaacattttagtttccgcgtccttgtaatat-------------gcttcctttgttagttgtccttgaggcttttagtt |
5478932 |
T |
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| Q |
110 |
tgtctttagttagcccttttttcatcaaaactaaaaaataaacattccaaatattaatgtagattataatcttaaataaattaaacattttaacacaacc |
209 |
Q |
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| T |
5478933 |
tgtctttagttagcccttttttcatgaaaactaaaaaataaacattccaaatattaatgtagattatattcttaaataaattaaacattttaacacaacc |
5479032 |
T |
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| Q |
210 |
ttcgaagtttttatccagcttcc |
232 |
Q |
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| T |
5479033 |
ttggaagtttttatccagcttcc |
5479055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 8406799 - 8406920
Alignment:
| Q |
92 |
tccttgaggcttttagtttgtctttagtta-------gccctttttt-catcaaaactaaaaaataaacattccaaatattaatgtagattataatctta |
183 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||| || | |||| ||||| |||| |||||||| |||||||| |||||| |||| |
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| T |
8406799 |
tcctagaggcttttagtttgtctttagttattgcatagccctttttttcaaccaaaccaaaaa-taaatattccaaaaattaatgtt-attatattcttt |
8406896 |
T |
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| Q |
184 |
aataaattaaacattttaacacaa |
207 |
Q |
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| T |
8406897 |
aataaatgaaacattttaacacaa |
8406920 |
T |
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