View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4308-Insertion-3 (Length: 204)

Name: NF4308-Insertion-3
Description: NF4308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4308-Insertion-3
NF4308-Insertion-3
[»] chr7 (2 HSPs)
chr7 (1-204)||(20459982-20460185)
chr7 (5-104)||(20471754-20471858)
[»] chr6 (2 HSPs)
chr6 (1-117)||(30636161-30636277)
chr6 (3-83)||(17279078-17279158)
[»] chr3 (6 HSPs)
chr3 (26-83)||(30137359-30137416)
chr3 (26-83)||(30143488-30143545)
chr3 (26-83)||(30146910-30146967)
chr3 (3-104)||(30069279-30069380)
chr3 (3-104)||(30154615-30154716)
chr3 (3-83)||(30173909-30173989)
[»] chr8 (2 HSPs)
chr8 (26-77)||(7941064-7941115)
chr8 (26-72)||(7946623-7946669)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 20459982 - 20460185
Alignment:
Q  1 atatcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatctttgtccgcaatatataaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20459982 atatcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatctttgtccgcaatatataaca 20460081  T
Q  101 tgcactgtgaattacatgtttccgaattcatgagaaataccacttttttgtttctaaaactggtcactaattttatttttatctcataatggcttttaca 200  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20460082 tgcactgcgaattacatgtttacgaattcatgagaaataccacttttttgtttctaaaactggtcactaattttatttttatctcataatggcttttaca 20460181  T
Q  201 gtaa 204  Q
    ||||    
T  20460182 gtaa 20460185  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 20471754 - 20471858
Alignment:
Q  5 caaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgt-----attttaaccatctttgtccgcaatatataac 99  Q
    ||||||||| || |||| || ||  ||||||||||| |||||||| ||| ||||||||||||||     ||||||||||||||||||    |||||||||    
T  20471754 caaacaatgtcttatgctaagctcactcctttggctctcttcttgtttgccacattttgtatgtatttaattttaaccatctttgtcaattatatataac 20471853  T
Q  100 atgca 104  Q
    |||||    
T  20471854 atgca 20471858  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 30636277 - 30636161
Alignment:
Q  1 atatcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatctttgtccgcaatatataaca 100  Q
    |||||||||||||||| |||| || ||||||||||||| ||| |||||| |||  |||||||||||||||||||||||||||||||   |||||||||||    
T  30636277 atatcaaacaatggcttatgctaagctagctcctttggttgtattcttgtttgcaacattttgtatgtattttaaccatctttgtcattaatatataaca 30636178  T
Q  101 tgcactgtgaattacat 117  Q
    |||| ||  ||||||||    
T  30636177 tgcattgctaattacat 30636161  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 17279158 - 17279078
Alignment:
Q  3 atcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatcttt 83  Q
    ||||| ||||| || |||| || || ||| |||||||||| ||||| ||||  |||||  |||||||||||||||||||||    
T  17279158 atcaagcaatgacttatgctaagctggctactttggctgtgttcttccttgcaacattgagtatgtattttaaccatcttt 17279078  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 30137416 - 30137359
Alignment:
Q  26 ctagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatcttt 83  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||    
T  30137416 ctagctcctttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatcttt 30137359  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 30143545 - 30143488
Alignment:
Q  26 ctagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatcttt 83  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||    
T  30143545 ctagctcctttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatcttt 30143488  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 30146967 - 30146910
Alignment:
Q  26 ctagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatcttt 83  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||    
T  30146967 ctagctcctttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatcttt 30146910  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 30069380 - 30069279
Alignment:
Q  3 atcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatctttgtccgcaatatataacatg 102  Q
    ||||| |||||||| |||  || ||||||||||| |||||||||||||||| | |||| ||||||||||| || ||||||  ||  | ||||||||||||    
T  30069380 atcaatcaatggcttatgttaagctagctccttttgctgtcttcttgcttgccgcattctgtatgtatttcaatcatcttcctcacccatatataacatg 30069281  T
Q  103 ca 104  Q
    ||    
T  30069280 ca 30069279  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 30154716 - 30154615
Alignment:
Q  3 atcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatctttgtccgcaatatataacatg 102  Q
    ||||| |||||||| |||  || || |||||||| |||||||||||||||| | |||| ||||||||||| || |||||||     ||||||||||||||    
T  30154716 atcaatcaatggcttatgttaagcttgctccttttgctgtcttcttgcttgccgcattctgtatgtatttcaatcatctttcgaaccaatatataacatg 30154617  T
Q  103 ca 104  Q
    ||    
T  30154616 ca 30154615  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 30173989 - 30173909
Alignment:
Q  3 atcaaacaatggctaatgcaaaactagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaaccatcttt 83  Q
    ||||| ||||||||||||  || ||||||||||| ||| ||||||||||||   |||| ||||||||||| || |||||||    
T  30173989 atcaatcaatggctaatgttaagctagctccttttgctatcttcttgcttgctgcattctgtatgtatttcaatcatcttt 30173909  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 7941064 - 7941115
Alignment:
Q  26 ctagctcctttggctgtcttcttgcttgtcacattttgtatgtattttaacc 77  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  7941064 ctagctcatttggttgtcttcttgcttgccacattttgtatgtattttaacc 7941115  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 7946623 - 7946669
Alignment:
Q  26 ctagctcctttggctgtcttcttgcttgtcacattttgtatgtattt 72  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  7946623 ctagctcatttggttgtcttcttgcttgccacattttgtatgtattt 7946669  T

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