View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4308_low_1 (Length: 568)
Name: NF4308_low_1
Description: NF4308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4308_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 9 - 568
Target Start/End: Original strand, 36322986 - 36323545
Alignment:
| Q |
9 |
caccaatataatggtggtggttgatgatggtcgcccggcggcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggttgacct |
108 |
Q |
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| T |
36322986 |
caccattatattggtggtggttgatgatggtcgcccggcagcggagctcccattaggatcgatggttgagctcattttaagcttaggagaaggttgacct |
36323085 |
T |
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| Q |
109 |
ccccnnnnnnnggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaactcatgtgtgtatgtgtagctaaagattaatggcaaacc |
208 |
Q |
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| T |
36323086 |
ccccaaaaaaaggacccttgggagaagcaacatggacaaacattgttaacaaaaaacaaaattcatgtgtgtatgtgtagctaaagattaatggcaaacc |
36323185 |
T |
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| Q |
209 |
tcggttaaaatatgcatatcattttcataatttgttatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatgattctg |
308 |
Q |
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| T |
36323186 |
tcggtttaaacatgcatatcattttcataatttgtaatacgaatatgtgtaaattttttctaaagatcgagcgagccattgtagttaactaatgattctg |
36323285 |
T |
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| Q |
309 |
taaatgcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatga |
408 |
Q |
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| T |
36323286 |
taaatgcatatgaataaaaattttcctcaaatacctgaccgcaaaatattttaaattctttagcctatttaaaacttatcaattacaagtaatgtaatga |
36323385 |
T |
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| Q |
409 |
agtctatatattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaa |
508 |
Q |
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| T |
36323386 |
agtctatatattgtgaattatgttgcagggactggcgttactcacagtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaa |
36323485 |
T |
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| Q |
509 |
aatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctac |
568 |
Q |
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| T |
36323486 |
aatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtctctac |
36323545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 417 - 564
Target Start/End: Original strand, 36330240 - 36330387
Alignment:
| Q |
417 |
tattgtgaattatgttgcagggactggcgttactcacggtacaagcacattaccctaacctaaaaccagccatatgcaacctctatgacaaaaatgcagt |
516 |
Q |
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| T |
36330240 |
tattgtgaactatgctgcagggactggcgttactcacagtacaagcacattaccctaatctgaaaccagccatatgcaacttacttgacaaaaatgcagt |
36330339 |
T |
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| Q |
517 |
gtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtct |
564 |
Q |
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| T |
36330340 |
gtgtgaaaaaattaatggcaaccatgaagcttttctcttcattagtct |
36330387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 505 - 564
Target Start/End: Original strand, 37919830 - 37919889
Alignment:
| Q |
505 |
caaaaatgcagtgtgtgaaaaaattagtggcaaccatgaagcttttctcttgattggtct |
564 |
Q |
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| T |
37919830 |
caaaaatgcagtgcgtgaaaaaattagtggcaaccatgaagcttttctcttcattagtct |
37919889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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