View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4308_low_2 (Length: 377)
Name: NF4308_low_2
Description: NF4308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4308_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 112 - 362
Target Start/End: Complemental strand, 21379540 - 21379290
Alignment:
| Q |
112 |
acatcataaacaacttctagtgttctttgttgcacattcccaaagatagtgatataactatcatctctattcgctgcaaatgccaaacaaacttgcctcg |
211 |
Q |
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| T |
21379540 |
acatcataaacaacttctagtgttctttgttgcacattcccaaagatagtaatatcactatcatctctattcgctgcaaatgccaaacaaacttgcctcg |
21379441 |
T |
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| Q |
212 |
aactcacagtgaaaagtactccgtgtgcaccaagctccacggtgacaccaccaccaaagacaaaactaatcttcggaacaaccacattattcctccctct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379440 |
aactcacagtgaaaagtactccgtgtgcaccaagctccacggtgacaccaccaccaaagacaaaactaatcttcggaacaaccacattattcctccctct |
21379341 |
T |
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| Q |
312 |
aagatcgtagcatgtatctaaaatggaaaaccccgaagtagctggatattt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21379340 |
aagatcgtagcatgtatctaaaatggaaaaccccgaagcagctggatattt |
21379290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 21406180 - 21406076
Alignment:
| Q |
112 |
acatcataaacaacttctagtgttctttgttgcacattcccaaagatagtgatataactatcatctctattcgctgcaaatgccaaacaaacttgcctcg |
211 |
Q |
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|||||||||||||| |||| |||||||||||||||||| ||||||||||| |||| ||||||||||| ||| | ||||| ||||||||| ||||| || |
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| T |
21406180 |
acatcataaacaacctctaatgttctttgttgcacatttccaaagatagtaatatcactatcatctccatttggcgcaaacgccaaacaagcttgcttca |
21406081 |
T |
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| Q |
212 |
aactc |
216 |
Q |
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||||| |
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| T |
21406080 |
aactc |
21406076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 13569673 - 13569713
Alignment:
| Q |
2 |
catcaccacaaccatatcttccttcatcacatggagcacct |
42 |
Q |
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| T |
13569673 |
catcaccacaaccatatcttccttcatcacatggagcacct |
13569713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 13569882 - 13569920
Alignment:
| Q |
4 |
tcaccacaaccatatcttccttcatcacatggagcacct |
42 |
Q |
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| T |
13569882 |
tcaccaccaccatatcttcctacatcacatggagcacct |
13569920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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