View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4309_high_10 (Length: 241)
Name: NF4309_high_10
Description: NF4309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4309_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45294393 - 45294172
Alignment:
| Q |
1 |
ctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294393 |
ctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgc |
45294294 |
T |
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| Q |
101 |
cgcttaccctaaggggaacaaaggaagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattctt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294293 |
cgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattctt |
45294194 |
T |
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| Q |
201 |
atgtatggtgatggccccggaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45294193 |
atgtatggtgatggccccggaa |
45294172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45303353 - 45303132
Alignment:
| Q |
1 |
ctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303353 |
ctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgc |
45303254 |
T |
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| Q |
101 |
cgcttaccctaaggggaacaaaggaagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattctt |
200 |
Q |
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| T |
45303253 |
cgcttaccctaaggggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattctt |
45303154 |
T |
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| Q |
201 |
atgtatggtgatggccccggaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
45303153 |
atgtatggtgatggccccggaa |
45303132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 45271231 - 45271015
Alignment:
| Q |
1 |
ctaaaatgaaaggaaacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgc |
100 |
Q |
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|||||||| || |||| ||||||||||||||| || || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |
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| T |
45271231 |
ctaaaatgcaacgaaaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaaccatccaggctgctcttgc |
45271132 |
T |
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| Q |
101 |
cgcttaccctaaggggaacaaaggaagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattctt |
200 |
Q |
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| ||||||||||||| ||||||| |||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || ||||||||||||||| |
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| T |
45271131 |
ctcttaccctaagggaaacaaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggaggctgttaacattctt |
45271032 |
T |
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| Q |
201 |
atgtatggtgatggccc |
217 |
Q |
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||||||||||||||||| |
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| T |
45271031 |
atgtatggtgatggccc |
45271015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 45282985 - 45282789
Alignment:
| Q |
21 |
tggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaaca |
120 |
Q |
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|||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||| |
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| T |
45282985 |
tggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagggaaaca |
45282886 |
T |
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| Q |
121 |
aaggaagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccc |
217 |
Q |
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|||| |||||| ||||||||||||||| || |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
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| T |
45282885 |
aaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatggccc |
45282789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 45274744 - 45274548
Alignment:
| Q |
21 |
tggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaaggggaaca |
120 |
Q |
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|||||||||||| || || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||| |||||||| |||| |
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| T |
45274744 |
tggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttatcctaagggaaaca |
45274645 |
T |
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| Q |
121 |
aaggaagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatggccc |
217 |
Q |
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|||| || ||| |||||||||||||||||| |||||||| |||||||||||| | ||||| || |||||||||||||||||||||||||||||||| |
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| T |
45274644 |
aaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatggccc |
45274548 |
T |
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