View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4309_high_2 (Length: 608)

Name: NF4309_high_2
Description: NF4309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4309_high_2
NF4309_high_2
[»] chr3 (19 HSPs)
chr3 (188-409)||(8252825-8253046)
chr3 (181-368)||(8350020-8350207)
chr3 (461-608)||(8252626-8252773)
chr3 (132-280)||(8352852-8353004)
chr3 (191-280)||(8356419-8356508)
chr3 (191-280)||(8360592-8360681)
chr3 (181-275)||(8260699-8260793)
chr3 (193-273)||(8334134-8334214)
chr3 (289-368)||(8260588-8260667)
chr3 (185-275)||(8258592-8258682)
chr3 (280-349)||(8356332-8356401)
chr3 (61-109)||(8353006-8353054)
chr3 (185-275)||(8265665-8265755)
chr3 (280-327)||(8258522-8258569)
chr3 (280-327)||(8265595-8265642)
chr3 (132-169)||(8350237-8350274)
chr3 (289-346)||(8352768-8352825)
chr3 (296-336)||(8334053-8334093)
chr3 (280-336)||(8360518-8360574)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 188 - 409
Target Start/End: Complemental strand, 8253046 - 8252825
Alignment:
Q  188 ttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaagagaaat 287  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  8253046 ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaagagaaac 8252947  T
Q  288 caaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaattgtctctcacgcttgtagtatgaatctgaatctgcttc 387  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  8252946 caaagaggaaggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtagcatgaatctgcatctgcttc 8252847  T
Q  388 ttatcagaaagtgcaatcgaca 409  Q
    ||||||||||||||||||||||    
T  8252846 ttatcagaaagtgcaatcgaca 8252825  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 181 - 368
Target Start/End: Complemental strand, 8350207 - 8350020
Alignment:
Q  181 tcactttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 280  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8350207 tcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtcaa 8350108  T
Q  281 gagaaatcaaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaattgtctctcacgcttgtagt 368  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||| || ||||||||||||||    
T  8350107 gagaaatcaaagaggaaggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagt 8350020  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 461 - 608
Target Start/End: Complemental strand, 8252773 - 8252626
Alignment:
Q  461 ctatatgaaaaaatatatgattcgtaaagaattaacattgtaggctcatgttatttgacataatttgaaatttatttcattaataatgtattgtcactga 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8252773 ctatatgaaaaaatatatgattcgtaaagaattaacattgtaggctcatgttatttgacataatttgaaatttatttcattaataatgtattgtcactga 8252674  T
Q  561 atacatcttgcaaaacttttatccaaacagtaattataaaaattgtgt 608  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  8252673 atacatcttccaatacttttatccaaacagtaattataaaaattgtgt 8252626  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 8353004 - 8352852
Alignment:
Q  132 actgcaatttcaagtcacacctaaatcttcatttcatt----tgtaaaccaagtcactttttgatggctttgatttcatctttcttcaattgttttggtc 227  Q
    ||||| ||||||||||||||||||||| ||||||||||    || ||||||| ||||||||||||||||||||||||||| || |||||||| |||||||    
T  8353004 actgcgatttcaagtcacacctaaatcctcatttcattgcagtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtc 8352905  T
Q  228 cttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 280  Q
    ||||||| |||||||| |||||||||| |||| ||| |||||| |||| ||||    
T  8352904 cttcttcgaactcatcttctcaagtttatgattatgatgaaaaatcatctcaa 8352852  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 8356508 - 8356419
Alignment:
Q  191 atggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 280  Q
    ||||||||||||| | | ||||||||||| |||||||  |||||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  8356508 atggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttctgattatgctcaaaattcatctcaa 8356419  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 8360681 - 8360592
Alignment:
Q  191 atggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcaa 280  Q
    ||||||||||||||| ||||||||||||| || ||||  |||||||||| ||||||||||||||||||| ||| ||||||||||| ||||    
T  8360681 atggctttgatttcagctttcttcaattgcttcggtctctcttcaaacttatcatctcaagtttctgattatgttgaaaattcatctcaa 8360592  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 8260793 - 8260699
Alignment:
Q  181 tcactttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 275  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||||||||||||||||||| ||| |||||| ||||    
T  8260793 tcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgatgaaaaatcat 8260699  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 8334214 - 8334134
Alignment:
Q  193 ggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattc 273  Q
    ||||||||| ||| | | ||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||    
T  8334214 ggctttgatatcaccatacttcaattgttttggtccttcttcaaactcatcttcacaagtttatgagaatgctgaaaattc 8334134  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 8260667 - 8260588
Alignment:
Q  289 aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaattgtctctcacgcttgtagt 368  Q
    |||||| || |||||||||||| |||||||||||||||||||||||||  ||||||||  || ||||||||| |||||||    
T  8260667 aaagagcaaagaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagt 8260588  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 8258682 - 8258592
Alignment:
Q  185 tttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 275  Q
    ||||| |||||||||||||||||  | || | ||| ||||| | ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  8258682 ttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgattatgatgaaaaatcat 8258592  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 8356401 - 8356332
Alignment:
Q  280 agagaaatcaaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaacaat 349  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||  |||| ||||||    
T  8356401 agagaaaccaaagagcaaggaaaaatcaatgggagctccaattgtagttccttatttccctgtcaacaat 8356332  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 8353054 - 8353006
Alignment:
Q  61 ataaccagaatttaaaccaatattacaactaaatcatttaagctttgca 109  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  8353054 ataacctgaattcaaaccaatattacaactaaatcatttaagctttgca 8353006  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 8265755 - 8265665
Alignment:
Q  185 tttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 275  Q
    ||||| ||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| ||| |||||| ||||    
T  8265755 ttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgatgaaaaatcat 8265665  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 8258569 - 8258522
Alignment:
Q  280 agagaaatcaaagaggaaggaaaaatcaaagggagctccaattgtagt 327  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||    
T  8258569 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagt 8258522  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 8265642 - 8265595
Alignment:
Q  280 agagaaatcaaagaggaaggaaaaatcaaagggagctccaattgtagt 327  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||    
T  8265642 agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagt 8265595  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 8350274 - 8350237
Alignment:
Q  132 actgcaatttcaagtcacacctaaatcttcatttcatt 169  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8350274 actgcaattttaagtcacacctaaatcttcatttcatt 8350237  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 8352825 - 8352768
Alignment:
Q  289 aaagaggaaggaaaaatcaaagggagctccaattgtagtttcttatttttctgttaac 346  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||  ||||||||    
T  8352825 aaagagaaaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaac 8352768  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 8334093 - 8334053
Alignment:
Q  296 aaggaaaaatcaaagggagctccaattgtagtttcttattt 336  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  8334093 aaggaaaaatcaaaaggagttccaattgtagtttcttattt 8334053  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 8360574 - 8360518
Alignment:
Q  280 agagaaatcaaagaggaaggaaaaatcaaagggagctccaattgtagtttcttattt 336  Q
    ||||||| ||||||  |||||||||||||  |||||||||||||||||| |||||||    
T  8360574 agagaaaccaaagatcaaggaaaaatcaataggagctccaattgtagttacttattt 8360518  T

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