View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4309_high_7 (Length: 315)
Name: NF4309_high_7
Description: NF4309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4309_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 44382072 - 44382318
Alignment:
| Q |
14 |
caattacttgtctaggtacataaatagaaagaaaaatgtgagtaaacttttacctgtaatatacatatggtaacgtgagggaaggtatgtttaaatgatc |
113 |
Q |
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| T |
44382072 |
caattacttgtctaggta----aatagaaagaaaaatgtgagtaaacttttacctgtaatatacatatggtaatgtgagtgaaggtatgttaaaatgatc |
44382167 |
T |
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| Q |
114 |
ttgtaatgttatcacataggcaaatcaatgagagaggtcagtttaaagcttcaaatgttcataaatagattttnnnnnnnngtatactacccattaatca |
213 |
Q |
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| T |
44382168 |
ttgtaatgttatcacataggcaaatcaatgagagaggtcagtttaaagcttcaaatgttcataaatagatttt-aaaaaaagtatactacccattaatca |
44382266 |
T |
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| Q |
214 |
ctattaaaccgactccgatcaaatttttgaaccttaaatcgttacatatatt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44382267 |
ctattaaaccgactccgatcaaatttttgaaccttaaatcgttacatatatt |
44382318 |
T |
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