View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4309_low_1 (Length: 820)
Name: NF4309_low_1
Description: NF4309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4309_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 34365156 - 34365600
Alignment:
| Q |
20 |
tatgtccaccacaaaaactactttgcaagtgctcaagatgtctgatacggtgttggaaaacttgtgatcaaatagcagtgctcctcnnnnnnnactggtc |
119 |
Q |
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| T |
34365156 |
tatgtccaccacaaaaactactttgcaag--------atgtctgatacggtgttggaaaacttgtgatcaaatagcagtgctcctctttttttactggtc |
34365247 |
T |
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| Q |
120 |
actttcttcccaccttatctcaagagttacacttctagctagctaactaggtttcaccacaaggaaattcaaatttttcatcattttacacaattcaagt |
219 |
Q |
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| T |
34365248 |
actttcttcccaccttatctcaagagttacacttctagctagctaactaggtttcaccacaaggaaattcaaatttttcatcattttacacaattcaagt |
34365347 |
T |
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| Q |
220 |
caattccaactacacatatatgaatgtatatggattaattgatctggcaaatacacattcgacaatcatccaaggtgagatttcttgcgtgtcaactttc |
319 |
Q |
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| T |
34365348 |
caattccaactacacatatatgaatgtatatggattaattgatctggcaaatacatattcgacaatcatccaaggtgaaatttcttacgtgtcaactttc |
34365447 |
T |
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| Q |
320 |
atgcaatcaaacatttatttaatcagttttactataattaattcaaaacacattgattattgactagctagtgtgattaggtaagactcgagaagaaatt |
419 |
Q |
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| T |
34365448 |
atgcaatcagacatttatttaatcagttttactataattaattcaaaccacattgattattgactagctagtgtgattaggtaagactcgaaaagaaatt |
34365547 |
T |
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| Q |
420 |
atatttatagtgcatggccaatagataaagtatacaccactatctcaaacttc |
472 |
Q |
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| T |
34365548 |
atatttatagtgcatggccaatagataaagtatacaccactatctcaaacttc |
34365600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 538 - 810
Target Start/End: Original strand, 34365666 - 34365938
Alignment:
| Q |
538 |
cataatatatagtaccgtctcaccactttcttgcattttgccaactattccccactatatatacaagttctaagttcttaggtctcataaaccaaacttt |
637 |
Q |
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| T |
34365666 |
cataatatatagtaccgtctcaccactttcttgcattttgccaactattccccactatatatacaagttctaagttcttaggtctcataaaccaaacttt |
34365765 |
T |
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| Q |
638 |
atattccttaataaatacccttaattgtttgaagatggtgtatacatcatctatgaagtcattgaaaatggtaatggttaaattgatgacattttttatg |
737 |
Q |
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| T |
34365766 |
atattccttaataaatacccttaattgtttgaagatgatgtatacatcatctatgaagtcattgaaaatggtaatggttaaattgatgacattttttatg |
34365865 |
T |
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| Q |
738 |
ctaatagaggtgattacatgccaattcgggttcggattcgggggagggttaaacatgaactactatttgatga |
810 |
Q |
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| T |
34365866 |
ctaatagaggtgattacatgccaattcgggttcggattcgggggagggttaaacatgaactactatttgatga |
34365938 |
T |
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