View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4309_low_2 (Length: 731)
Name: NF4309_low_2
Description: NF4309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4309_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 4 - 720
Target Start/End: Original strand, 38365249 - 38365959
Alignment:
| Q |
4 |
attcaatcaggtttgctcttcttttctcttttctaattattattatagtgacatgataatatgatatcattgatatggatagaaaattggcgtgtaaaag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38365249 |
attcaatcaggtttgctcttcttttctcttttctaattattattatagtgacatgataatatgatatcattgatatggatagaaaattggcgtgtaaaag |
38365348 |
T |
|
| Q |
104 |
tacaaactatagaaagtgtttgtggacataagccaattaaataatccaaagagtatatcacaatacctaccactaacgtggaaatttagcatcctataat |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38365349 |
tacaaactatagaaagtgtttttggacataagccagttaaataatccaaagagtat--cacaatacctaccactaacgtggaaatttagcatcctataat |
38365446 |
T |
|
| Q |
204 |
attcaatctaaaatctacgtcccaaagtagtatggaattattattatgatgttaacgattaagttggcagatactcaattttttcgagattaaattgacg |
303 |
Q |
| |
|
||||||||||||||||||||| |||| || |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38365447 |
attcaatctaaaatctacgtcacaaacta--------------ttattatgttaacaattaagttggcagatactcaattttttcgagactaaattgacg |
38365532 |
T |
|
| Q |
304 |
gatttcatatactttattatatttatatgatttagaagttaaatagaagaaagagtgataa-cttagactaaatagatagtttattcaaaattaatttac |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38365533 |
gatttcatatactttattatatttatatgatttagaagttaaatagaagaaagagtgataaccttagactaaatagatagtttattcaaaattaatttac |
38365632 |
T |
|
| Q |
403 |
actgataatgataatgcatctccattaatctcaacctaatggtctacaatggattct--agagggtccgggttcctacgagttcaaatatgtttactttc |
500 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38365633 |
actgataatgataatgcttctccattaatctcaacctaatggtctacaatggattctagagagggtccgggttcctaagagttcaaatatgtttactttc |
38365732 |
T |
|
| Q |
501 |
actttaataataataataggtaatttgaatgactatgctcatttcaatttttcaccaataataca-----------------ttacattacttgcagatg |
583 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38365733 |
actt---------taataggtaatttgaatgactatgctcatttc-atttttcaccaataatacattttagagattgaagatttacattacttgcagatg |
38365822 |
T |
|
| Q |
584 |
tctgaaatgctgaaccagaaatcagccatacaaggaaaaattccttctggatattttaatgctgtatttgatctaagtggtgattggtttcgtgatgctc |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38365823 |
tctgaaatgctgaaccagaaatcagccatacaaggaaaaattccttctggatattttaatgctgtatttgatctaagtggtgattggtttcgtgatgctc |
38365922 |
T |
|
| Q |
684 |
aagacatcaaatctcttgcttttgatggttacttcat |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38365923 |
aagacatcaaatctcttgcttttgatggttacttcat |
38365959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 38229350 - 38229313
Alignment:
| Q |
294 |
taaattgacggatttcatatactttattatatttatat |
331 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38229350 |
taaattgacggatttcatatagtttattatatttatat |
38229313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 574 - 720
Target Start/End: Complemental strand, 34888717 - 34888571
Alignment:
| Q |
574 |
cttgcagatgtctgaaatgctgaaccagaaatcagccatacaaggaaaaattccttctggatattttaatgctgtatttgatctaagtggtgattggttt |
673 |
Q |
| |
|
||||||||||||||| ||||||| || || ||||| |||||||||||||||||||||| |||||||||||| | |||||| | |||||||||||| || |
|
|
| T |
34888717 |
cttgcagatgtctgagttgctgaatcaaaagtcagctgtacaaggaaaaattccttctggctattttaatgctctttttgatatgagtggtgattggctt |
34888618 |
T |
|
| Q |
674 |
cgtgatgctcaagacatcaaatctcttgcttttgatggttacttcat |
720 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||||| |
|
|
| T |
34888617 |
cgtgatgctgctgacatcaaatatcttgcttttgatggttatttcat |
34888571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University