View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4309_low_4 (Length: 559)
Name: NF4309_low_4
Description: NF4309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4309_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Complemental strand, 10880327 - 10879798
Alignment:
| Q |
19 |
catactgcacggagacattgagatttccaaaagatgtttcctccaagctaacaaaaatcatacctcgatttctaaaccaaaaacaccatctaagggaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10880327 |
catactgcacggagacattgagatttccaaaagatgtttcctccaagctaacaaaaatcatacctcgatttctaaaccaaaaacaccatctaagggaaag |
10880228 |
T |
|
| Q |
119 |
gaaaaggaaattgctacgagactcccaatcctcaaactccctatattaagtcgaagtcataccacatagtatgacttcttcacccatgctcctatttaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10880227 |
gaaaaggaaattgctacgagactcccaatcctcaaactccctatattaagtcgaagtcataccacatagtatgacttcttcacccatgctcctatttaag |
10880128 |
T |
|
| Q |
219 |
tcgtcaccaataaagagaatgtaaccaatccccatacaacattaagtattaggttggttttatcaaatataaactgtatagaaccaaatagactcataaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10880127 |
tcgtcaccaataaagagaatgtaaccaatccccatacaacattaagtattaagttggttttatcaaatataaactgtatagaaccaaatagactcataaa |
10880028 |
T |
|
| Q |
319 |
atattacaaccgttcataccacatataaattgtataaaaccatataaattgtatcaaatataagttatcagaaccaattataactccacgtatccctcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10880027 |
atattacaaccgttcataccacatataaattgtataaaaccatataaattgtatcaaatataagttatcagaaccaattataactccacgtatccctcaa |
10879928 |
T |
|
| Q |
419 |
attatattagaaccaaataacttctgatgcaaggttgaaaattagccgattttttcaacggcataagtttatataattatactatcagaggctaatgagg |
518 |
Q |
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| T |
10879927 |
attatattagaaccaaataacttctgatgcaaggttgaaaattagccgattttttcaacggcataagtttatataattatactatcagaggctaatgagg |
10879828 |
T |
|
| Q |
519 |
cctccaatcctagatttgcttcttcttcat |
548 |
Q |
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| T |
10879827 |
cctccaatcctagatttgcttcttcttcat |
10879798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Complemental strand, 10918781 - 10918251
Alignment:
| Q |
19 |
catactgcacggagacattgagatttccaaaagatgtttcctccaagctaacaaaaatcatacctcgatttctaaaccaaaaacaccatctaagggaaag |
118 |
Q |
| |
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|||| ||| ||||||||||||| || |||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||||| |
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| T |
10918781 |
catattgcgcggagacattgaggttgccaaaatatgtttcctccaagctaacaaa--tcagacctcgatttccaaaccaaaaacaccatcttagggaaag |
10918684 |
T |
|
| Q |
119 |
gaaaaggaaattgctacgagactcccaatcctcaaactccctatattaagtcgaagtcataccacatagtatgacttcttcacccatgctcctatttaag |
218 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||| |
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| T |
10918683 |
gaaaaggaaattgctacgagactcccagtcctcagcctccctatattaagtcaaagtcataccacatagtatgtctacttcacccatgctcatatttaaa |
10918584 |
T |
|
| Q |
219 |
tcgtcaccaataaagagaatgtaaccaatccccatacaacattaagtattaggttggttttatcaaatataaactgtatagaaccaaatagactcataaa |
318 |
Q |
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||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||| |||||||||| || |
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| T |
10918583 |
tcgtcaccaataaagaggatgtaaccaatcctcataaaacattaagtattaagttggttttataaaatataaaatgtgtagaaccacatagactcatgaa |
10918484 |
T |
|
| Q |
319 |
atattacaaccgttcataccacatataaattgtataaaaccatataaattgtatcaaatataagttat-cagaaccaattataactccacgtatccctca |
417 |
Q |
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|||| | ||| ||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| || | ||||||||| |||||||||||||||||||| |
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| T |
10918483 |
atatcataacggtttataccacatataaattgtatagaaccacataaattgtatcaattataaattttatagaaccaatcataactccacgtatccctca |
10918384 |
T |
|
| Q |
418 |
aattatattagaaccaaataacttctgatgcaaggttgaaaattagccgattttttcaacggcataagtttatataattatactatcagaggctaatgag |
517 |
Q |
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||||||||||||||||||||||| ||||||| |||||||| |||| | |||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
10918383 |
gattatattagaaccaaataacttacgatgcaatgttgaaaaatagctggttttttcaacggcataagcttatataattatactattagaggctaatgag |
10918284 |
T |
|
| Q |
518 |
gcctccaatcctagatttgcttcttcttcatct |
550 |
Q |
| |
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||| |||||||||||||| || ||||||||||| |
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| T |
10918283 |
gccaccaatcctagattttctacttcttcatct |
10918251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 17432926 - 17432984
Alignment:
| Q |
246 |
atccccatacaacattaagtattaggttggttttatcaaatataaactgtatagaacca |
304 |
Q |
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|||| ||||||| |||||||||| ||||||||||||||| ||||| ||||| |||||| |
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| T |
17432926 |
atcctcatacaatattaagtattgtgttggttttatcaaaaataaattgtatcgaacca |
17432984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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