View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310-Insertion-12 (Length: 172)
Name: NF4310-Insertion-12
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39943687 - 39943858
Alignment:
| Q |
1 |
gtaatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgt |
100 |
Q |
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| T |
39943687 |
gtaatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgt |
39943786 |
T |
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| Q |
101 |
gaaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaagacaaaggagcacagtctga |
172 |
Q |
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| T |
39943787 |
gaaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaagacaaaggagcacagtctga |
39943858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 28749208 - 28749056
Alignment:
| Q |
2 |
taatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgtg |
101 |
Q |
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| T |
28749208 |
taatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtg |
28749109 |
T |
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| Q |
102 |
aaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaaga |
154 |
Q |
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| T |
28749108 |
aaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaaga |
28749056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 28753221 - 28753069
Alignment:
| Q |
2 |
taatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgtg |
101 |
Q |
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| T |
28753221 |
taatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtg |
28753122 |
T |
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| Q |
102 |
aaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaaga |
154 |
Q |
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| T |
28753121 |
aaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaaga |
28753069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 2 - 170
Target Start/End: Complemental strand, 28739257 - 28739089
Alignment:
| Q |
2 |
taatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgtg |
101 |
Q |
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| T |
28739257 |
taatgtatttctttggtcttttcctaattgtattctttttaaatcacaggttttcatatccatagcaatgatccttggtgatggtctatacaactttgtg |
28739158 |
T |
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| Q |
102 |
aaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaagacaaaggagcacagtct |
170 |
Q |
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| T |
28739157 |
aaagttcttagcacaactcttataggtatgtacaagcaatggaacaaaaaagacaaaggagcagagtct |
28739089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 29246126 - 29246074
Alignment:
| Q |
48 |
caggttttcataggcatagcaatgattcttggtgatggtctatacaactttgt |
100 |
Q |
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| T |
29246126 |
caggtatttatagccatagccatgatccttggagatggtctatacaactttgt |
29246074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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