View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310-Insertion-6 (Length: 122)
Name: NF4310-Insertion-6
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 929488 - 929371
Alignment:
| Q |
5 |
ttatctgcttcaaatccactccgaacgtcaaatcactaacgcgatgaacataacctcctgcaaacgacaaaatgcaatacattacatacatggacatgat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
929488 |
ttatctgcttcaaatccactccgaacgtcaaatcactaacgcgatgaacataacctcctgcaaacgacaaaatgcaatacattacatacatggacatgat |
929389 |
T |
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| Q |
105 |
ttcaattttgtcaatcgt |
122 |
Q |
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|||||||||||||||||| |
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| T |
929388 |
ttcaattttgtcaatcgt |
929371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 16486070 - 16485954
Alignment:
| Q |
5 |
ttatctgcttcaaatccactccgaacgtcaaatcactaacgcgatgaacataacctcctgcaaacgacaaaatgcaatacattacatacatggacatgat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||| |
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| T |
16486070 |
ttatctgcttcaaatccactccgaacgtcaaatcactaacgcgatgaacataacctcctgcgaacaacaaaatgcaatacattacatatatggatatgat |
16485971 |
T |
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| Q |
105 |
ttcaattttgtcaatcg |
121 |
Q |
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| ||||||||||||||| |
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| T |
16485970 |
tccaattttgtcaatcg |
16485954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 4e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 21816840 - 21816956
Alignment:
| Q |
5 |
ttatctgcttcaaatccactccgaacgtcaaatcactaacgcgatgaacataacctcctgcaaacgacaaaatgcaatacattacatacatggacatgat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||| |
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| T |
21816840 |
ttatctgcttcaaatccactccgaacgtcaaatcactaacgcgatgaacataacctcctgcgaacaacaaaatgcaatacattacatatatggatatgat |
21816939 |
T |
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| Q |
105 |
ttcaattttgtcaatcg |
121 |
Q |
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| ||||||||||||||| |
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| T |
21816940 |
tccaattttgtcaatcg |
21816956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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