View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4310_high_1 (Length: 633)

Name: NF4310_high_1
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4310_high_1
NF4310_high_1
[»] chr1 (2 HSPs)
chr1 (5-613)||(50971632-50972240)
chr1 (537-613)||(17573726-17573802)
[»] chr2 (1 HSPs)
chr2 (278-450)||(9008773-9008945)
[»] chr8 (1 HSPs)
chr8 (298-438)||(16519490-16519630)
[»] chr3 (3 HSPs)
chr3 (243-319)||(500145-500221)
chr3 (322-382)||(36870901-36870961)
chr3 (44-97)||(4133355-4133408)
[»] chr7 (1 HSPs)
chr7 (44-97)||(8423708-8423761)
[»] chr4 (1 HSPs)
chr4 (47-128)||(36085803-36085884)
[»] chr5 (1 HSPs)
chr5 (83-127)||(30193802-30193846)


Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 5 - 613
Target Start/End: Complemental strand, 50972240 - 50971632
Alignment:
Q  5 gagtgagaagaattgattcat-aaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttg 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50972240 gagtgagaagaattgattcatcaaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgaaatgcatgtgaggaatttgtttacttg 50972141  T
Q  104 atctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttattgcctgcttcatgc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50972140 atctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttattgcctgcttcatgc 50972041  T
Q  204 tttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  50972040 tttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcat--gtgttctggcctctatttttgacacttttatagtctaactc 50971943  T
Q  304 aatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaacggaagcagcaa 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50971942 aatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaatggaagcagcaa 50971843  T
Q  404 ggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgtatgttgaagttatacg 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50971842 ggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgtatgttgaagttatatg 50971743  T
Q  504 gtaaatctgttcatcattttatatgctctttatctctgtttctctattctctttctttgtttcactgctca-nnnnnnncttaggctatgacttgagttt 602  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  50971742 gtaaatctgttcatcattttatatgctctttatctctttttctctattctctttctttgtttcactgctcattttttttcttaggctatgacttgagttt 50971643  T
Q  603 tgaggtatttt 613  Q
    |||||||||||    
T  50971642 tgaggtatttt 50971632  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 613
Target Start/End: Complemental strand, 17573802 - 17573726
Alignment:
Q  537 ctctgtttctctattctctttctttgtttcactgctcannnnnnncttaggctatgacttgagttttgaggtatttt 613  Q
    ||||||||||||  ||||||||| ||||||||||||||       ||||||| ||||||| ||||||||||||||||    
T  17573802 ctctgtttctctgctctctttctctgtttcactgctcattttcttcttaggccatgacttaagttttgaggtatttt 17573726  T

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Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 278 - 450
Target Start/End: Original strand, 9008773 - 9008945
Alignment:
Q  278 tttttgacacttttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgtt 377  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||    
T  9008773 tttttaacacttttatagtctaactcaatataattgcttagatttcatgcaggacacacttcacaaccacattggcatcaatgggtatatagatgatgtt 9008872  T
Q  378 gaagctatagaaaacggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcagga 450  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9008873 gaagctatagaaaatggaagcaacaaggttgataaagaaaatacagtccaaaagaatgaaattctcttcagga 9008945  T

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Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 298 - 438
Target Start/End: Complemental strand, 16519630 - 16519490
Alignment:
Q  298 taactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaacggaag 397  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||| | || ||| |||| |||||| |||||||||| ||||||||||||||| |||||    
T  16519630 taactcaatataattgtttaaacttcatgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaag 16519531  T
Q  398 cagcaaggttgataaagaaaatactgtccaaaagaatgaaa 438  Q
    ||  |||||||| |||||||| |  || |||||||||||||    
T  16519530 caaaaaggttgacaaagaaaagatagttcaaaagaatgaaa 16519490  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 500221 - 500145
Alignment:
Q  243 atatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactcaatataattgcttaaa 319  Q
    |||||||| ||||||||||||| || |||| ||||||||  ||||||||||| |||||||||||||||||| |||||    
T  500221 atatctttcgtttttcatatgttttatggcttctattttctacacttttatattctaactcaatataattgtttaaa 500145  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 36870961 - 36870901
Alignment:
Q  322 tcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagc 382  Q
    ||||||| || ||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  36870961 tcatgcaagaaacacttcacaaccacattggtagcaatgagtctatagatgacgttgaagc 36870901  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 4133355 - 4133408
Alignment:
Q  44 gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt 97  Q
    |||||| ||||||||| ||||  |||||||||| |||||||| |||||||||||    
T  4133355 gtgtttcgagaatgcatgtaacgtgtttgatgaaatgcatgtcaggaatttgtt 4133408  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 8423708 - 8423761
Alignment:
Q  44 gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt 97  Q
    |||||| ||||||||| ||||  |||||||||| ||||||||||||||||||||    
T  8423708 gtgtttcgagaatgcatgtaaagtgtttgatgaaatgcatgtgaggaatttgtt 8423761  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 36085884 - 36085803
Alignment:
Q  47 tttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttgatctcctatgactggtgcttgttca 128  Q
    ||||||||| |||| |||  |||||||||| |||  ||||| ||||||||||||||| ||| |||||| |||| ||||||||    
T  36085884 tttggagaaggcacataaagtgtttgatgaaatgattgtgatgaatttgtttacttggtctgctatgattggttcttgttca 36085803  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 30193802 - 30193846
Alignment:
Q  83 tgtgaggaatttgtttacttgatctcctatgactggtgcttgttc 127  Q
    ||||||||||||||||||||| ||| |||||| ||||| ||||||    
T  30193802 tgtgaggaatttgtttacttggtctgctatgattggtggttgttc 30193846  T

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