View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4310_high_10 (Length: 219)
Name: NF4310_high_10
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_high_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 30239512 - 30239730
Alignment:
| Q |
1 |
actatatactatattatatatcatgcggtgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggattgattcagtcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30239512 |
actatatactatattatatatcatgcggtgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggattgattcagtcgg |
30239611 |
T |
|
| Q |
101 |
tgtcatgaaaagatnnnnnnntaatctgaccgatgaaaatgtttcattttgtttggacttggttnnnnnnntggtcagaatcagagcacttccatgagca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30239612 |
tgtcatgaaaagataaaaaaataatctgaccgatgaaaatgtttcattttgtttggacttggttaaaaaaatggtcagaatcagagcacttccatgagca |
30239711 |
T |
|
| Q |
201 |
ctaaaaatcccacaatatg |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30239712 |
ctaaaaatcccacaatatg |
30239730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University