View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310_high_2 (Length: 539)
Name: NF4310_high_2
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 48 - 514
Target Start/End: Complemental strand, 33022316 - 33021853
Alignment:
| Q |
48 |
accagagttgaatcttttgataacagcaattgaacccgaccaccaacacggtaacatgccagtataccgacagttcactattcaacaacaaataaaaggt |
147 |
Q |
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| T |
33022316 |
accagagttgaatcttttgaaaacagcgcttgaaccataccgccaacatggtaacgtgtctgtatacagacagttcgctattcaacagcaagttaaaggt |
33022217 |
T |
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| Q |
148 |
catttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccccagagcgacagaagcaatctgtatgcatc |
247 |
Q |
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| T |
33022216 |
cgtttctagcctatctgtccgaattcaatcacgaaggattgaaaccaatttaagaccattccaaaattcccctgagcagcagaagcaatctgtatgcatt |
33022117 |
T |
|
| Q |
248 |
gacaccagcaaatctcaacagacctagaatagaatcaagtaaccaatgccataaaagcaaaccaccaatcaaatccaacacaaccctaccaaccttactg |
347 |
Q |
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| T |
33022116 |
gacaccagcaaatctcaatagacctagaatagaatcaagtcaccaatgccagaaaagcaaactgccaatcaaatccaacacaaccctaccgacccgactg |
33022017 |
T |
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| Q |
348 |
tgaaagcacatatatttgtctatatatatatcaactattgacagaactagaaacatcatttatgctttcaaatattgaagtttccacaaggaatgtgacc |
447 |
Q |
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| T |
33022016 |
cgaaagcacatatatttgtcaatatatatatcaccttttgacagaactaaaaacaccatttatgctttcaaatattgaagtttccacaaggaatgtaaaa |
33021917 |
T |
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| Q |
448 |
aaagaaatgatatactgaatatgtaaagtgccatattttggacttgtaatcctcatcatggaagaca |
514 |
Q |
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| T |
33021916 |
aaagaaattacatactgaagatgtaaagtgccattttttttacttgtaa---tcatcatggaagaca |
33021853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 119 - 340
Target Start/End: Complemental strand, 33028515 - 33028294
Alignment:
| Q |
119 |
agttcactattcaacaacaaataaaaggtcatttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccc |
218 |
Q |
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| T |
33028515 |
agttcactattcaacaacaaataaaaggtcatttctagcctatctgtctggatccaatcacaaaggatcgaaacaaatttaagaccattccaaaattccc |
33028416 |
T |
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| Q |
219 |
cagagcgacagaagcaatctgtatgcatcgacaccagcaaatctcaacagacctagaatagaatcaagtaaccaatgccataaaagcaaaccaccaatca |
318 |
Q |
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| T |
33028415 |
cagagcgacagaagcaatctgtatgcatcgacaccagcaaatctcaacagacctagaatagaatcaattaaccaatgccgtaaaagcaaaccgccaatca |
33028316 |
T |
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| Q |
319 |
aatccaacacaaccctaccaac |
340 |
Q |
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| T |
33028315 |
aatccaacacaaccctaccaac |
33028294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 379 - 522
Target Start/End: Complemental strand, 33028297 - 33028154
Alignment:
| Q |
379 |
caactattgacagaactagaaacatcatttatgctttcaaatattgaagtttccacaaggaatgtgaccaaagaaatgatatactgaatatgtaaagtgc |
478 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33028297 |
caactattgacagaactagaaacaccatttatgctttaaaatattgaagtttccacaaggaatgtgaccaaagaaatgatatactgaatatgtaaagtgc |
33028198 |
T |
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| Q |
479 |
catattttggacttgtaatcctcatcatggaagacatgacaact |
522 |
Q |
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| T |
33028197 |
catattttggacttgtaatcctcatcatggaagacatgacaact |
33028154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 33028640 - 33028548
Alignment:
| Q |
13 |
aatatctttcaagtaatttgcaacaatatacccctaccagagttgaatcttttgataacagcaattgaacccgaccaccaacacggtaacatgc |
106 |
Q |
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| T |
33028640 |
aatatctttcaagtaatttgcaacaatataccc-taccagagttgaatcttttgataacagcaattgaacccgaccatcaacacggtaacatgc |
33028548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 438 - 522
Target Start/End: Complemental strand, 33039560 - 33039475
Alignment:
| Q |
438 |
gaatgtgaccaaagaaatgatatactgaatatgtaaagtgcca-tattttggacttgtaatcctcatcatggaagacatgacaact |
522 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||| | |||||||| ||||||| |
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| T |
33039560 |
gaatgtgaccaaagaaatgacatactgaatttgtaaagtgccatttttttggacttgtaatcctcattagggaagacaggacaact |
33039475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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